DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30122 and hnrnpub

DIOPT Version :9

Sequence 1:NP_001163196.1 Gene:CG30122 / 37146 FlyBaseID:FBgn0050122 Length:1272 Species:Drosophila melanogaster
Sequence 2:NP_001028767.2 Gene:hnrnpub / 334490 ZFINID:ZDB-GENE-030131-6422 Length:796 Species:Danio rerio


Alignment Length:1187 Identity:293/1187 - (24%)
Similarity:452/1187 - (38%) Gaps:410/1187 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDVAKLEKMKVVDLRNELQSRGLDTKGVKAVLVERLRAYVEGGAGDGENAPVTPSRRQRRTRSMS 65
            |....::|:||.:|::||:.|.|..||:||.|:|||:|.::..|...|.....|.     |...|
Zfish     1 MSEINVKKLKVNELKDELKKRQLSDKGLKAELMERLQAALDAEAQAQEEETTAPG-----TTEGS 60

  Fly    66 RSPSPVQAAPVAAEPVLDTLEEEEQPEDKTVPQPEPESEQPAAEPEPEQSEPEEAEPAAAVTEDT 130
            :..:......|||       |:|...|:      |||.|.  .|.|.:..|.:||          
Zfish    61 KVGNDADGNGVAA-------EQEGTGEE------EPEGEN--MEAEEQNGEGDEA---------- 100

  Fly   131 TVNQAVNEESQPEPEEFDEKSETDDKQETIEEAVPAVVPQNEVADEPMEEDHDAAPEEQEPTQTE 195
                |..::...|.||.|:  :.||..|.|::|:.         ||..|||...           
Zfish   101 ----AGQDDEMGEEEEEDD--DDDDAGEEIDKALD---------DEDDEEDDII----------- 139

  Fly   196 EPVEEKPAESTVAEHQSNGDSQKMDVDEEDSAAPKTAEETEPAAKPEDQPPERRKRSHSRSKSRS 260
                                 .|:||::.|      |::...|.:...:..:||:..|.|.    
Zfish   140 ---------------------DKIDVEDGD------ADKDSSADQKNKKGVKRRREDHGRG---- 173

  Fly   261 RSGSRSSKHRGSVGDKRESKAAAEERTVPEDEPTIEENKVGLSWLDSDLHLRIDPTTFASAKPLT 325
                    :...:.:.:.|:..:.:..:.|.:...::..|.|...:.|||.::....: ||..||
Zfish   174 --------YFEFIEESKYSRTKSPQPPLEEVDEEFDDTLVCLDPYNCDLHFKVSRNRY-SASSLT 229

  Fly   326 SEIYSLIWSGARANYGVREGKVCFEVRLSEESVPE--NSHY--FRDEPHVRGFRVGFSMPKSSLL 386
            .|.::.:|:|.||:|||.:||||||::::|::..:  ||..  |.|      ..:|:|:....|.
Zfish   230 MESFAHLWAGGRASYGVNKGKVCFEMKVTEKTPIKHLNSKIMDFHD------VHIGWSLANGCLS 288

  Fly   387 LGEAEHSFGYCETGRKATQSEFTDYGKPYQLDDVIGCYLDLESEPCTINYTLNGEDLGVAFEFEK 451
            |||.|.|:.|.:.|:||:.....|||:.:..:|||||:::.|::...|:::.||.||||||:..|
Zfish   289 LGEEEFSYSYSDKGKKASNCVTEDYGEGFDENDVIGCFINFEADEVEISFSKNGNDLGVAFKVNK 353

  Fly   452 SILGEEGALFPHIVTKGYEYLVNFSDTEQLLVNAERPTRKRRKPRKDEDKDKDDDKDDNDGEKWK 516
            ..|.:. |||||::........||...|....                                 
Zfish   354 ESLADR-ALFPHVLCHNCTVEFNFGQNETPFF--------------------------------- 384

  Fly   517 VLDEATADDDEVEKKDEDGKASSEKDEEEAEDPEKAKEDEAAPKTETEAETKVEAPAEAAKPESE 581
                                                                             
Zfish   385 ----------------------------------------------------------------- 384

  Fly   582 ATEASETAETSTEKSSETAAVSNGDAAAEQANDEKASEDKKPSENNDEEDEDGPSPNKRPKTDGD 646
                                                                       ||    
Zfish   385 -----------------------------------------------------------PK---- 386

  Fly   647 SEKAESEKEKDRSQTTEDEYEDVVPEPRDTAALLEGYVLIGLVPVEKLVSGPQRVGSRKECEVIL 711
                                             ||.:..:..:|:|:.:.||:...::|:||||:
Zfish   387 ---------------------------------LEDFTFMQQIPLEERIRGPKGPVAKKDCEVIV 418

  Fly   712 LVGLPGAGKTHWAHKHVAENADKRYELIGPDAFISKMTIDGASRKTVHKGRWDKVYEICLNSLAA 776
            :|||||:|||.|..|||.||..| |.::..:..:.|:.|:...|:.....:...:.:.....|..
Zfish   419 MVGLPGSGKTTWVVKHVEENPGK-YNILSTNTVLEKLMINSVKRQNKDITKLMAISQRVPFYLGK 482

  Fly   777 LEDIAMKRRRNFILDQTNVYASAQRRKMKGFNDFKRIAVVCIPSEDELKRRIAEKEEKGNAFTVK 841
            |.:||.:::|::|||||||.::||||||..|..|:|.|||..|:::.||.| |:|:.:.:...:.
Zfish   483 LIEIAARKKRHYILDQTNVSSAAQRRKMCLFAGFQRKAVVVFPTDENLKER-AQKKAEADGKDIP 546

  Fly   842 ESTINNLRANFTLPSLEFGWFDDINYTELTGDEAKSEVKKYNEKGKKAIDAERSRDK----RSRG 902
            |..:..::|.:|||. :...|.::.|.||..|||...::||.|:.|.|:..|:..::    ..||
Zfish   547 EHALLKMKALYTLPE-QGDCFSEVTYVELQKDEASKLLEKYKEESKNALPPEKKPNQGPPTPKRG 610

  Fly   903 SRDNYRRDDRNRNRYNDDRRRDYGGQRHESRWSDSRRGGGGGGYSSNSGGGGSRGYDNRRNYNSG 967
            ||       |.|.:.|...|..               ||||||...|.||.|  |:..|.||.: 
Zfish   611 SR-------RGRGQKNQFNRSG---------------GGGGGGGQGNRGGRG--GFQPRGNYRA- 650

  Fly   968 SGGQQNWVQNSRRSGYD--DRGY----GGGGSGSRGYDNRNRGYAGGSGGGGGGGGGGGGGGGQQ 1026
                  .:...|.||:|  .|||    .......|||.:|: ||..| |.||....|....||| 
Zfish   651 ------LLAPPRVSGFDRRPRGYILPPPPPPPVYRGYPSRD-GYNRG-GSGGMQSRGMSPRGGQ- 706

  Fly  1027 NWMQNNRRSGYDDRGYGSSRDYRDRDRGNDRSRMGSNDRNRGSSQSSYRSGGGTHQQRDFRPGHR 1091
              |:.|..|    ||.|.|       ||...:|.|  :.:||..|     ||..|:      ||.
Zfish   707 --MRGNMAS----RGGGMS-------RGGHANRGG--NMHRGGGQ-----GGPNHR------GHY 745

  Fly  1092 DTKEDSRGGYERSAGQSLPKYGNNTAVGGGYDQYKQQGGAPGGGKASLSGKWSTYSQHHQQQQAP 1156
            ..|...|||::::.|    .|||                           |.|:::|...|.   
Zfish   746 QQKFHGRGGHQQNRG----GYGN---------------------------KNSSFAQAFNQS--- 776

  Fly  1157 QHQQTGIWQTQQQSQQY 1173
              .|.|.|..:..:|||
Zfish   777 --WQQGFWNQKPWNQQY 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30122NP_001163196.1 SAP 6..40 CDD:280251 17/33 (52%)
SPRY_hnRNP 300..480 CDD:293942 67/183 (37%)
PHA02664 <529..659 CDD:177447 2/129 (2%)
AAA_33 709..855 CDD:290396 54/145 (37%)
NK 709..>836 CDD:302627 51/126 (40%)
DUF1777 1033..>1104 CDD:285811 21/70 (30%)
hnrnpubNP_001028767.2 SAP 6..40 CDD:128789 17/33 (52%)
SPRY_hnRNP 205..381 CDD:293942 67/183 (37%)
NK 416..583 CDD:302627 63/169 (37%)
AAA_33 416..560 CDD:290396 54/145 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 129 1.000 Domainoid score I5203
eggNOG 1 0.900 - - E1_KOG2242
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 404 1.000 Inparanoid score I1871
OMA 1 1.010 - - QHG47565
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001523
OrthoInspector 1 1.000 - - otm25316
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12381
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3099
SonicParanoid 1 1.000 - - X963
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1111.050

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