DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30122 and Hnrnpu

DIOPT Version :9

Sequence 1:NP_001163196.1 Gene:CG30122 / 37146 FlyBaseID:FBgn0050122 Length:1272 Species:Drosophila melanogaster
Sequence 2:XP_038946213.1 Gene:Hnrnpu / 117280 RGDID:620372 Length:803 Species:Rattus norvegicus


Alignment Length:1078 Identity:273/1078 - (25%)
Similarity:429/1078 - (39%) Gaps:324/1078 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LEKMKVVDLRNELQSRGLDTKGVKAVLVERLRAYVEGGAGDGENAPVTPSRRQRRTRSMSRSPSP 70
            ::|:||.:|:.||:.|.|..||:||.|::||:|.::..|| |..|             |......
  Rat     8 VKKLKVSELKEELKKRRLSDKGLKADLMDRLQAALDNEAG-GRPA-------------MEPGNGS 58

  Fly    71 VQAAPVAAEPVLDTLEEEEQPEDKTVPQPEPESEQPAAEPEPEQSEPEEAEPAAAVTEDTTVNQA 135
            :.....||......||:|     ......:.|.|:..|..:.:|.|..|...||...:...:.: 
  Rat    59 LDLGGDAAGRSGAGLEQE-----AAAGAEDDEEEEGIAALDGDQMELGEENGAAGAADAGAMEE- 117

  Fly   136 VNEESQPEPEEFDEKSETDDKQETIEEAVPAVVPQNEVADEPMEEDHDAAPEEQEPTQTEEPVEE 200
              ||:..|.|..|                          |:..:|..|...:|:|....|....|
  Rat   118 --EEAASEDENGD--------------------------DQGFQEGEDELGDEEEGAGDENGHGE 154

  Fly   201 KPAESTVAEHQSNGDSQKMDVDEEDSAAPKTAEETE--------PAAKPEDQPPERRKRSHSRSK 257
            :.::...|..|:   ||:....:|  ||.|::..|.        |.|:...|......::..::.
  Rat   155 QQSQPPAAAQQA---SQQRGPGKE--AAGKSSGPTSLFAVTVAPPGARQGQQQAGGDGKTEQKAG 214

  Fly   258 SRSRSGSRSSKHRGS-----VGDKRESKAAAEERTVPEDEPTIEENKVGLSWLDSDLHLRIDPTT 317
            .:.|...|..:..|.     :.:.:.|:|.:.:..|.|::...::..|.|...:.|||.:|....
  Rat   215 DKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDR 279

  Fly   318 FASAKPLTSEIYSLIWSGARANYGVREGKVCFEVRLSEESVPENSHYFRDEPHVRGFRVGFSMPK 382
            . ||..||.|.::.:|:|.||:|||.:||||||::::|: :|.. |.:..:..:...|:|:|:..
  Rat   280 L-SASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEK-IPVR-HLYTKDIDIHEVRIGWSLTT 341

  Fly   383 SSLLLGEAEHSFGYCETGRKATQSEFTDYGKPYQLDDVIGCYLDLESEPCTINYTLNGEDLGVAF 447
            |.:||||.|.|:||...|.|....|..|||:.:..:|||.|:.:.|::...::|..||:||||||
  Rat   342 SGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFETDEVELSYAKNGQDLGVAF 406

  Fly   448 EFEKSILGEEGALFPHIVTKGYEYLVNFSDTEQLLVNAERPTRKRRKPRKDEDKDKDDDKDDNDG 512
            :..|.:|.:. .||||::........||                                    |
  Rat   407 KISKEVLADR-PLFPHVLCHNCAVEFNF------------------------------------G 434

  Fly   513 EKWKVLDEATADDDEVEKKDEDGKASSEKDEEEAEDPEKAKEDEAAPKTETEAETKVEAPAEAAK 577
            :|                                                               
  Rat   435 QK--------------------------------------------------------------- 436

  Fly   578 PESEATEASETAETSTEKSSETAAVSNGDAAAEQANDEKASEDKKPSENNDEEDEDGPSPNKRPK 642
                                                       :||                   
  Rat   437 -------------------------------------------EKP------------------- 439

  Fly   643 TDGDSEKAESEKEKDRSQTTEDEYEDVVPEPRDTAALLEGYVLIGLVPVEKLVSGPQRVGSRKEC 707
                                      ..|.|.|.       ..|..||:|..|.||:....:|:|
  Rat   440 --------------------------YFPIPEDC-------TFIQNVPLEDRVRGPKGPEEKKDC 471

  Fly   708 EVILLVGLPGAGKTHWAHKHVAENADKRYELIGPDAFISKMTIDGASRKTVHKGRWDKVYEICLN 772
            ||::::||||||||.|..||.|||..| |.::|.:..:.||.:.|..::....|:.:.:.:....
  Rat   472 EVVMMIGLPGAGKTTWVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQ 535

  Fly   773 SLAALEDIAMKRRRNFILDQTNVYASAQRRKMKGFNDFKRIAVVCIPSEDELKRRIAEKEE-KGN 836
            .|....:||.:::||||||||||.|:||||||..|..|:|.|||..|.:::.|:|..:|.| :|.
  Rat   536 CLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGK 600

  Fly   837 AFTVKESTINNLRANFTLPSLEFGWFDDINYTELTGDEAKSEVKKYNEKGKKAIDAERSRDKRSR 901
              .:.|..:..::.|||||.:. ..||:|.|.||..:||:..:::|.|:.|||:..|:   |::.
  Rat   601 --DLPEHAVLKMKGNFTLPEVA-ECFDEITYVELQKEEAQKLLEQYKEESKKALPPEK---KQNT 659

  Fly   902 GSRDNYRRDDRNRNRYNDDRRRDYGGQRHESRWSDSRRGGGGGGYSSNSGG--GGSRGYDNRRNY 964
            ||:.:      |:|:...::....||.|            |.||::...|.  ||:.|  ||..|
  Rat   660 GSKKS------NKNKSGKNQFNRGGGHR------------GRGGFNMRGGNFRGGAPG--NRGGY 704

  Fly   965 NSGSGGQQNWVQNSRRSGYDDRGYGGGGSGSRGYDNRNRGYAGG---SGGGGGGGGGGGGGGGQQ 1026
            |             ||.....|| ||||||..||.     |..|   .|.||....|....||..
  Rat   705 N-------------RRGNMPQRG-GGGGSGGIGYP-----YPRGPVFPGRGGYSNRGNYNRGGMP 750

  Fly  1027 NWMQNNRRSGYDD--RGYGSSRDYRDRDRGNDRSRMGS 1062
            |      |..|:.  ||.|::|.|:::.:|.::.:.||
  Rat   751 N------RGNYNQNFRGRGNNRGYKNQSQGYNQWQQGS 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30122NP_001163196.1 SAP 6..40 CDD:280251 16/33 (48%)
SPRY_hnRNP 300..480 CDD:293942 67/179 (37%)
PHA02664 <529..659 CDD:177447 2/129 (2%)
AAA_33 709..855 CDD:290396 58/146 (40%)
NK 709..>836 CDD:302627 53/127 (42%)
DUF1777 1033..>1104 CDD:285811 10/32 (31%)
HnrnpuXP_038946213.1 SAP 8..42 CDD:128789 16/33 (48%)
SPRY_hnRNP 262..437 CDD:293942 69/320 (22%)
AAA_33 473..617 CDD:404546 58/146 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 132 1.000 Domainoid score I4973
eggNOG 1 0.900 - - E1_KOG2242
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 370 1.000 Inparanoid score I2064
OMA 1 1.010 - - QHG47565
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001523
OrthoInspector 1 1.000 - - otm45295
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12381
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X963
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1111.020

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