DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec6 and Exoc3l4

DIOPT Version :9

Sequence 1:NP_611351.1 Gene:Sec6 / 37142 FlyBaseID:FBgn0266671 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001100229.1 Gene:Exoc3l4 / 299338 RGDID:1307749 Length:721 Species:Rattus norvegicus


Alignment Length:696 Identity:139/696 - (19%)
Similarity:265/696 - (38%) Gaps:111/696 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 REVRRRMDEVERLLRG------VPE----VYDALEVVREENTKHSQYATAM--ENLKHIFNVDAS 127
            |.:||.:|  |.|..|      |||    |.|.:.         .|.||.:  |:|:.    .|.
  Rat    85 RSLRRALD--EGLTAGHPQGTAVPEKPSRVTDGVS---------QQAATGVEAEDLER----QAE 134

  Fly   128 VQKTMALIEDDKLLNAHQCLADLENS--RDDLLYELHKQPKQHASDKITLKRHFEKVDTVSQELE 190
            .:....||.:.:|:.|.:.|..||..  .|.......:.|..:|...:.|..|::       .:.
  Rat   135 SKSVADLITERQLVKAFEQLRYLETQLVADKTSRTFTQDPTAYARRAMDLCLHYD-------GMA 192

  Fly   191 KKLRLILSRTLNTLRKKPTIIVTALRIIEREEKNDQFALQQQKVTGFLPPGRPKAWRRMIMDVLQ 255
            .::..|:...||:.......:....:::..||:..|.|   |....||  ..|:.||:...|.::
  Rat   193 AEIGAIVREALNSEGVDRDALAELAQVVHLEEEAHQTA---QAEGDFL--STPRHWRQHWEDAVR 252

  Fly   256 QSVITRIE--GSK-LEERADNKMWLVRDLEILRQIILEDLRVVKSLCVPCF-PPHYDIFGEYVKF 316
            .|...|::  |:| :...|:....|.:.|..|..::..||:.|:|...|.: ...:.::..|::.
  Rat   253 LSAQERVQQAGAKVIPGAAEGASDLAQLLAELGGVVRRDLQKVRSEMQPAYEATDFPVWETYLRA 317

  Fly   317 YHEGLSSYLDNIVRSGLEGNEYVSMMAWVTHTYPGVELMSHPDLNVDVHRQIGTLLRPEHLKALE 381
            :|..::..|..:.|......:...::.|..:.|...:.:..|||.:.. ..:..||.|.....||
  Rat   318 FHSAVAQRLQELARDARGCEQLYVLLDWAANVYGSPDFLGAPDLALPT-EPLPPLLEPALWARLE 381

  Fly   382 DEYLQNMQRNFQEWMTKAAETEKQEWFTETVPDQD--EEYYHTSAPVIIFQMIDQHLQVTNTIHQ 444
            .:|...::...........:.|:..|  |...|.:  :..||....:.:..::.:|::....|..
  Rat   382 SDYTSFLETKITSCFDSILQLEQSRW--EAGEDLEVLQGLYHAPLSIDVHMLVAEHVKAAGAISA 444

  Fly   445 ELTFKALVMSIQQVEIFGQTYLKNVIELK---EHHFRNRDQIKYFTHYIITIVN-NSQQMVELAQ 505
            ||....|.:..:.:.:|...:.|..:..|   |.         |...||...|. .:..:.....
  Rat   445 ELEATTLQICARALCLFVPRFEKAFLASKAVSEW---------YLGAYINACVELRTSLLARFPG 500

  Fly   506 QMKQLYWPKSRTEHYEDFERLLATFQRIRAHAASYLLEEAFLDMECHFNDLFTAKWLASNIAVDT 570
            .:|:|..|            |:|.....:.|    ||:.|..|::..|..|:|..||..    ||
  Rat   501 TIKELERP------------LVAATNNFQKH----LLQIAQQDIQPLFKVLYTRNWLTQ----DT 545

  Fly   571 ICVTLD---DYFQDYNHLRPNNFEMVINEAQKLLAKRYIRALLSKRLSKPRAECDAITR-----K 627
            :...:|   |:.....|:.|...:..:.|..:.:.:.|:..:|     :|......:.|     |
  Rat   546 LHPLMDKVVDFAHHLEHVTPPLAQDTLQEVHRFVVREYLGQVL-----RPHERFSGLDRVKGSHK 605

  Fly   628 IKTEAKRFKLFFEKIAPKISLSDSPLDLIS-TLSALLSSDIELLVLDLHTLLGSYPSLNEDHLVR 691
            :..:|:.....|..:..:....|..:..:: .|......||.   ..|.||:.|||.:..||::.
  Rat   606 MSLDAQAISNTFRGLGSEAKWLDQAIPSVAEILGETYKDDIR---RHLETLIRSYPDIRRDHILA 667

  Fly   692 LFYIRNDVKAAEVREKVQDAMKSKKAMVSIAKQD------CIFKEI 731
            :..:|.     ..|.:.|:.::..:.::..|.::      .:|:||
  Rat   668 ILALRR-----LGRRRNQNLLQHTQDLLRAAHENRPSSHHVLFEEI 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec6NP_611351.1 Sec6 179..731 CDD:283659 107/576 (19%)
Exoc3l4NP_001100229.1 Sec6 182..708 CDD:303062 109/582 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352494
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5173
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391172at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR21292
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.850

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