DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRpS28 and mrps28

DIOPT Version :10

Sequence 1:NP_523785.2 Gene:mRpS28 / 37136 FlyBaseID:FBgn0034361 Length:194 Species:Drosophila melanogaster
Sequence 2:NP_001071258.2 Gene:mrps28 / 777746 ZFINID:ZDB-GENE-061110-52 Length:176 Species:Danio rerio


Alignment Length:177 Identity:70/177 - (39%)
Similarity:100/177 - (56%) Gaps:29/177 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MASLTCRSRMP------MVIRLI-----SGNTEKPAEESTPAVNTETAEIGSSKGGFARAF---- 63
            |.:::.||.:|      ..:|.:     ||..:|..|.              .|.|||.|:    
Zfish     8 MINVSSRSSLPPKQCVFATLRSLYSSDASGGDDKHTER--------------PKSGFAAAYNLHS 58

  Fly    64 DKYTAPATPPQLPEDNQTFASLLRNSKLIDLDNAEGKVVSGKIFHVVGDDLYIDFGWKFHCVCSR 128
            |...:.......|.:..:|.:|||.|.|:.:..|:||:..|||||:|.||||:|||.||||||.|
Zfish    59 DLQQSGERRMMSPREESSFPALLRQSVLLQMGPAKGKIAIGKIFHIVNDDLYVDFGGKFHCVCKR 123

  Fly   129 PTRNASDYVRGARVRLRIKDLELSTKFLGSSKDITILEADCHLLGLL 175
            |..:...|.||::||||::||||:::|||::.|.|:|||:..|||||
Zfish   124 PAVDGEKYQRGSKVRLRLEDLELTSRFLGATTDTTLLEAEATLLGLL 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpS28NP_523785.2 MRP-S35 76..180 CDD:402037 55/100 (55%)
mrps28NP_001071258.2 MRP-S35 71..175 CDD:402037 55/100 (55%)

Return to query results.
Submit another query.