DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GEFmeso and PEX13

DIOPT Version :9

Sequence 1:NP_788403.2 Gene:GEFmeso / 37134 FlyBaseID:FBgn0050115 Length:1549 Species:Drosophila melanogaster
Sequence 2:NP_013292.1 Gene:PEX13 / 850888 SGDID:S000004181 Length:386 Species:Saccharomyces cerevisiae


Alignment Length:64 Identity:25/64 - (39%)
Similarity:38/64 - (59%) Gaps:13/64 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1320 KRDSQSTVINLLMEAAQEHESRPLPK--NSVSGSESS--LLPR--ALKSIDNLSMAFGRSNRPP 1377
            :|::||  ::.:|.:.|: :|||..:  ||.|.|||:  :|||  ||    |.|..:|.||..|
Yeast    22 QRNAQS--LSAMMTSNQQ-DSRPTEESNNSNSASESAPEVLPRPAAL----NSSGTYGESNTIP 78

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GEFmesoNP_788403.2 RhoGEF 548..713 CDD:279015
PH_PLEKHG1_G2_G3 694..839 CDD:270063
PEX13NP_013292.1 Peroxin-13_N 140..283 CDD:397970
SH3_Pex13p_fungal 310..369 CDD:212705
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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