DRSC/TRiP Functional Genomics Resources

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Protein Alignment GEFmeso and arhgef9a

DIOPT Version :9

Sequence 1:NP_788403.2 Gene:GEFmeso / 37134 FlyBaseID:FBgn0050115 Length:1549 Species:Drosophila melanogaster
Sequence 2:XP_005165263.1 Gene:arhgef9a / 559868 ZFINID:ZDB-GENE-070705-271 Length:549 Species:Danio rerio


Alignment Length:431 Identity:105/431 - (24%)
Similarity:190/431 - (44%) Gaps:77/431 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 SELARLNNRPLSSSSICSTSSSSSSGSDQLLN--GKLMATSYLASVESLAESENELGDQHHP--- 536
            :...|:.:.|..|..:...:..::|   :|.|  .||.......:...:|||.:|:.:.|..   
Zfish    59 ASFVRVESHPPQSKQLFYINPVAAS---RLTNATAKLWVNQEENTAVEVAESSSEVQNGHAEASP 120

  Fly   537 -PAMSVLEKTCL----------------EIVDSERSFVEDLGQVIKGYLQDWKERA-CLRVDELQ 583
             |:...|   ||                ||:.:||.:::.|..:.:|||:..|:|. ....|:|:
Zfish   121 NPSTDCL---CLGQPTQNRDQMRANVINEIMSTERHYIKHLKDICEGYLRQCKKRRDMFNDDQLK 182

  Fly   584 ILFANIEEIYEFNSML---LQRLINTGRDP--GRIARCFIDLRDGFDVYTTYCTSYPEAISLLTK 643
            ::|.|||:||.|....   |::..|| .:|  ..|..||::.:|||.:|:.||.::.:|...||:
Zfish   183 VIFGNIEDIYRFQLSFVRDLEKQFNT-EEPHLSEIGPCFLEHQDGFWIYSEYCNNHVDACMELTR 246

  Fly   644 LLQAT---HTYSLLASTQKLLQHRLPLGSYLLKPVQRILKYHLLLDSLRK-----HCDVKEVVEA 700
            |::..   |.:......|:::.  :.:..|||.|||:|.||.|.|..|.|     |.|.:.|..|
Zfish   247 LMRDARYQHFFEACRLVQQMID--IAIDGYLLTPVQKICKYPLQLAELLKYTVQEHSDYRYVAAA 309

  Fly   701 HVIMRQVAHNIDQVKRKQEQQSRVKELSGILDGWLG-------PELTVLGELRQEGLLMEQHNKQ 758
            ..:||.|...|::.||:.|...::.:....:..|.|       .||...||:   ..:.:.:.:.
Zfish   310 LAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGEDILDRSSELVYTGEM---SWIYQPYGRS 371

  Fly   759 --RLVLLFATMLIITKQKEDGR--LQFKTYISQNNLMLSEHLPGEPTSFYVIPFDEPRHQIKLTA 819
              |:..||...:::.|:....|  |.:|..|..:...:.:.:.|....|.|    ..::..||..
Zfish   372 QTRIFFLFDHQMVLCKKDLIRRDILYYKGRIDLDRYEVIDAIDGRDDDFNV----SVKNAFKLAN 432

  Fly   820 RNRDQKRIWTQHIKGVMLEKLDIPMRAKELVYQL-GNEEDR 859
            |:.|:..::             :|.:.:|.:..| ..:|:|
Zfish   433 RDTDEIHLF-------------LPKKLEEKIRWLRAFQEER 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GEFmesoNP_788403.2 RhoGEF 548..713 CDD:279015 59/178 (33%)
PH_PLEKHG1_G2_G3 694..839 CDD:270063 30/155 (19%)
arhgef9aXP_005165263.1 SH3_ARHGEF9_like 13..64 CDD:212762 0/4 (0%)
RhoGEF 143..322 CDD:279015 59/181 (33%)
PH_Collybistin_ASEF 327..466 CDD:269931 27/154 (18%)
PH 372..458 CDD:278594 18/102 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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