DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GEFmeso and CG15611

DIOPT Version :9

Sequence 1:NP_788403.2 Gene:GEFmeso / 37134 FlyBaseID:FBgn0050115 Length:1549 Species:Drosophila melanogaster
Sequence 2:NP_611189.2 Gene:CG15611 / 36930 FlyBaseID:FBgn0034194 Length:508 Species:Drosophila melanogaster


Alignment Length:549 Identity:127/549 - (23%)
Similarity:218/549 - (39%) Gaps:154/549 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   361 TIN-FDLVAQHMERLTL----------------ADPGDLDPRAELIEAVNKTLVNK-PLVRSSSA 407
            |:| ||:|:..:..|.:                ||.|      :.|:.|:|....: ||:.|.|.
  Fly     7 TLNLFDVVSVVLTFLVIFLVQILNVYLHILDDNADNG------KSIDVVDKAPAKECPLLESQSP 65

  Fly   408 ACASTICSSPLLTYARTKSLGAKASTLGGGVPIKLPTAEQLAELEEANKLSAESLDRLTDIKPKF 472
                   |||:.| ...||   :||:.|     ||  .:|::.|:..:.:|              
  Fly    66 -------SSPIAT-TLPKS---QASSNG-----KL--EKQISLLDSDSGIS-------------- 98

  Fly   473 AARLSELARLNNRPLSSSSICSTSSSSSSGSDQLLNGKLMATSYLASVESLA----ESENELG-- 531
                          |||.:.|||::::||.:.:..||.....|:..|.|:|.    |.|:.|.  
  Fly    99 --------------LSSINTCSTTAANSSPTYRAPNGFHSFPSHTLSFETLGDEYHEDEDTLSLE 149

  Fly   532 -----DQHHPPAMSVLEKTCLEIVDSERSFVEDL--GQVIKGYLQDWKE--RACLRVDELQILFA 587
                 ||....|...:.....|::.:|.::|.:|  |.:..|.|:|.::  .|.....:.::|..
  Fly   150 NLFPCDQTEIYASKKISFIIDELIQTEVNYVNNLKKGMLNYGQLKDVEDLPEALSGETKQKMLLG 214

  Fly   588 NIEEIYEFNSM-LLQRLINTGRDPGRIARCFIDLRDGFDVYTTYC-TSYPEAISLLTKLLQATHT 650
            ||:||.|.:.. :|..::...||   :...|.:....|:..:.|| .|:........:|.|....
  Fly   215 NIKEILELHEKEILPLMLRNQRD---LKGLFDEFAAHFEKNSFYCYVSFTMGKKSSMQLRQDNRL 276

  Fly   651 YSLLASTQKLLQHRLPLGSYLLKPVQRILKYHLLLDSL-----RKHCDVKEVVEA----HVIMRQ 706
            :  |.:.|..::.:|.:.|:|::|:||:.:|.|||...     :.....|.|:.|    ...||:
  Fly   277 W--LQTYQTQIKDKLGIDSFLVQPIQRLTRYPLLLQQFISEFYKSGISCKPVLTAVCKLETRMRR 339

  Fly   707 VAHNIDQVKRKQEQQSRVKELSGILDGWLGPELTV--LGELRQEGLLMEQHNKQR-----LVLLF 764
            ....::|.    |:...::||:         ||.|  ||..|:......||...|     .|.||
  Fly   340 ALDVVNQA----EEIPNIEELN---------ELDVLQLGNFRRATEFDAQHFPTRKKYRSKVFLF 391

  Fly   765 ATMLIITKQKEDGRLQFKTY--------------ISQN-----NLMLSEHLPG-------EPTSF 803
            ...|:.|:.::. ||.::.:              :|.|     ||::.:...|       |..||
  Fly   392 DRCLVCTEVRKK-RLAYRQHYNWEHVELQRPLDSVSSNANKIINLLVKQEEGGSSVGSKREEYSF 455

  Fly   804 ------YVIPFDEPRHQIKLTARNRDQKR 826
                  .|..:.:..|:|...|||...:|
  Fly   456 MAAEASVVKQWLQATHKIIEIARNEHARR 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GEFmesoNP_788403.2 RhoGEF 548..713 CDD:279015 42/179 (23%)
PH_PLEKHG1_G2_G3 694..839 CDD:270063 40/176 (23%)
CG15611NP_611189.2 RhoGEF 167..313 CDD:238091 37/150 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462278
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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