DRSC/TRiP Functional Genomics Resources

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Protein Alignment GEFmeso and CG30440

DIOPT Version :9

Sequence 1:NP_788403.2 Gene:GEFmeso / 37134 FlyBaseID:FBgn0050115 Length:1549 Species:Drosophila melanogaster
Sequence 2:NP_610172.1 Gene:CG30440 / 35496 FlyBaseID:FBgn0050440 Length:1057 Species:Drosophila melanogaster


Alignment Length:1163 Identity:237/1163 - (20%)
Similarity:411/1163 - (35%) Gaps:368/1163 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 IESDSDTSERWEDFFGSSTELAPSLLGIYDTLTNSFAAGGVA-----AAPTATSHESKAS----- 57
            :|.||||.        :||.:....|    .:|:....|..|     :.|...:..:|.:     
  Fly    13 MEEDSDTR--------NSTYVPKMEL----LMTHYIHEGKKAIMYRSSEPQIAARRNKKTRFVGN 65

  Fly    58 -------SSGDSTPKRSNSNCSSSSSTGSSTGS-------------CSSVPTSDDQSASYTLASS 102
                   |..:::.|.|.|.|..::.|.....|             .|.:...:|.|.|..|.::
  Fly    66 RRQLRNLSQPENSHKTSRSLCPDTAKTEPKVYSLRFVLNKSEDKDYMSRLKAQNDFSQSSCLCNN 130

  Fly   103 STHLGHQEPPA---PLVVAGLRDEPDGAQLSRLVQRRSQESQIHGSSSSIASSGSSRRGSNIR-- 162
            .:| .:.|..|   ..::.|.||..|....:..:|.|:..      .:.|.:.|.  |.::::  
  Fly   131 LSH-ANTEAGAYQNDGILKGQRDHSDFLTAAGGIQSRADR------IARIETCGI--RTTHLQPE 186

  Fly   163 ------ILSPNVHRIITHS-----------DIQPVEAVSAEALKQHQQQSQRSPTQ--GR----- 203
                  :..||..|...||           |:.....:||       ..|:..|.:  ||     
  Fly   187 TQILKPVTEPNETRFDQHSPDWLFKNSRIGDVSNSSKLSA-------CNSELPPEEYKGRTLYHD 244

  Fly   204 ------YIKTGHSGTPPAAGSAPKLKLSHI--PLSKITGKLSTQSGSELVSTFDSSNEYLNSVAF 260
                  |||...    |...:..|:.::..  |.:|.|..........:......:..:||.|  
  Fly   245 TKFDCAYIKNRR----PLITTESKMSITEAEHPQTKYTDIKYDYKTCSISQGLHQNKAFLNKV-- 303

  Fly   261 AAFEKSKPQDEDRTPTNKSVPGTPFHFDGHPFQG--RKLTLPRYDSQQSIK----------LIEM 313
                          |.:|.  ..|||...:.:..  :||.|.: :|::.|:          .::.
  Fly   304 --------------PPSKQ--SKPFHSVDYDYYENIQKLHLSK-ESERQIRDNGDPNDLQNFLKK 351

  Fly   314 EQLAATSAQLLHAKPATPGTPATPTPSATKAKEFVCSEPLSPVDIVDTINFDLVAQHMERLTLAD 378
            ..:.||:.:||.|             :|...|:  |:     :|:...:| ||..:. |..|..|
  Fly   352 NLIKATTNELLKA-------------AAQSTKK--CN-----IDLERKLN-DLNIKE-EDHTSND 394

  Fly   379 PGDL---DPRAELIEAVN----------------------------KTLVNKPLVRSSSAACAST 412
            .|:.   ||....:..:|                            |:.:.:.:...|||:.:.:
  Fly   395 SGNSYKNDPYLVSMSKINSCKFIRSYNRDCETIFPTGDHSDLNEFRKSFMPQSVDLLSSASVSLS 459

  Fly   413 ICSSPLLTYARTKSLGAKASTLGGGVPIKLPTAEQLAELEE-------ANKLSAESLDRLTDIKP 470
            .|....|.         |.|..|        :.|...|..|       .|:||.:.|:       
  Fly   460 SCDGSCLN---------KDSICG--------SEEDCCECNEYQCIATPPNELSKDCLN------- 500

  Fly   471 KFAARLSELARLN------NRPLSSSSICSTS------------------------SSSSSGSDQ 505
                .:.|....|      :..|:||..||.|                        |...||:|:
  Fly   501 ----AVEEGVFCNTEYDDFHENLTSSCCCSGSFCDDDGCSYLDEGLSVDIKSKNVQSLHESGTDE 561

  Fly   506 LLNGKLMATSYLASVESLAESENELGD-----------QHHPPAMSVLEK-------------TC 546
            .|:.|   |..||..|...:....:.|           .|.|.:..:.:|             ..
  Fly   562 KLSRK---TILLARTEDTNDVTQGISDGTTYFTGSLNITHLPKSNEIFKKPQDPEMQRHRRGHIL 623

  Fly   547 LEIVDSERSFVEDLGQVIKGYLQDWKERACLRVDE-----LQ----ILFANIEEIYEF-NSMLLQ 601
            .|:.::|:.:|.::..::|||...      |:.||     ||    :||.|:.|||.| |.:.|:
  Fly   624 KELFETEKIYVNEIASILKGYYDR------LKSDESAPASLQGKANVLFGNLNEIYSFHNDVFLK 682

  Fly   602 RLINTGRDPGRIARCFIDLRDGF-DVYTTYCTSYPEAISLLTKLLQATHTYSLLASTQKLLQHRL 665
            .|.|......|:|.||:..||.| .:|:.||.:...:..|...|:.   |:......|..|.|:|
  Fly   683 DLENCISVTERVALCFVKRRDKFYQLYSFYCQNIQRSEKLRETLVD---THMFFKECQIGLGHKL 744

  Fly   666 PLGSYLLKPVQRILKYHLLL---------DSLRKHCDVKEVVEAH-VIMRQVAHNIDQVKRKQEQ 720
            |||:|||||||||.||.|||         ||.|.  ::|..::.. ::::.|..::.|:.     
  Fly   745 PLGAYLLKPVQRITKYQLLLKDLLLFTDNDSCRN--ELKNALDCMLIVLKCVNDSMHQIS----- 802

  Fly   721 QSRVKELSGILDGWLGPELTVLGEL-----------RQEGLLMEQHNKQRLVLLFATMLIITKQK 774
                      :.|:.| :|...|||           .::.:.:....|:|.:.|:...|::.||.
  Fly   803 ----------ITGFSG-DLAKQGELLMQDSFQVWIESKKDIRLRMKPKRRHIFLYQKSLLLCKQT 856

  Fly   775 -----EDGRLQFKTYISQNNLMLSEHLPGEPTSFYVIPFDEPRHQI-KLTARNRDQKRIWTQHIK 833
                 .....|||:.:..:.:.|:|.:.|:...|.|  :.:.|.:: .|.|.....|.:|...||
  Fly   857 SKSGYNKSSYQFKSDVKMSQIGLTESVSGDAKRFEV--WLKGRQEVYTLQASTIGVKEMWVAEIK 919

  Fly   834 GVMLEKLDIPMRAKELV-YQLGNEEDRTPDRSTWKWSLHSGSNSTPTYLERRNAC---------R 888
            .|:..:|: .::..::. |.:.::       |.|:.|.....|.|...| ||..|         |
  Fly   920 RVLFNQLE-KLKGDQIARYNIRHQ-------SLWQKSSCEAPNITHCSL-RRTECFELPLNDSNR 975

  Fly   889 RSEIRQRNSKFKRKTVANSSSFDSFNESLEQEEESISQAKPSKPLARNNSLDDTALQK 946
            .:.||...:....:.:.|       ..|::.:.|..|.:.....:..:.:::...:||
  Fly   976 NTNIRSEKTCLSDQNIVN-------GPSVQDQHEKNSWSSDCSDIDEDETINPILMQK 1026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GEFmesoNP_788403.2 RhoGEF 548..713 CDD:279015 61/185 (33%)
PH_PLEKHG1_G2_G3 694..839 CDD:270063 31/162 (19%)
CG30440NP_610172.1 RhoGEF 622..796 CDD:214619 61/184 (33%)
PH-like 802..925 CDD:302622 28/140 (20%)
PH 829..922 CDD:278594 21/94 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462271
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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