DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GEFmeso and Arhgef7

DIOPT Version :10

Sequence 1:NP_788403.2 Gene:GEFmeso / 37134 FlyBaseID:FBgn0050115 Length:1549 Species:Drosophila melanogaster
Sequence 2:XP_008769602.3 Gene:Arhgef7 / 114559 RGDID:620624 Length:901 Species:Rattus norvegicus


Alignment Length:897 Identity:178/897 - (19%)
Similarity:329/897 - (36%) Gaps:213/897 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   371 MERLTLADPGDLDP--------RAELIEAVNKTLVNKPLVRSSSAACASTICSSPLLTYARTK-- 425
            :|||.   ||.::.        :.:....|..:||....|.:.....:.::|:.|  :..|.|  
  Rat   113 LERLL---PGTIEKTFDANDLYQGQNFNKVLSSLVTLNKVTADIGLGSDSVCARP--SSHRIKSF 172

  Fly   426 -SLGAKASTLGGGVPIKLPTAEQLAELEEANKLSAESLDRLTD---IKPKFAARLSELARLNNRP 486
             |||:::|            ..:.::|.::...|.:..|....   ::.||     ...:.|...
  Rat   173 DSLGSQSS------------HSRTSKLLQSQYRSLDMTDNANSQLVVRAKF-----NFQQTNEDE 220

  Fly   487 LSSSS---ICSTSSSSSSGSDQLLNGKLMATSYLAS--VESLAESENEL----GDQHHPPA---M 539
            ||.|.   |..|........:...||:   |.:..|  |..:..||..:    |....||.   .
  Rat   221 LSFSKGDVIHVTRVEEGGWWEGTHNGR---TGWFPSNYVREIKPSEKPVSPKSGTLKSPPKGFDT 282

  Fly   540 SVLEKTCLEIV-----DSERSFVEDLGQVIKGYLQDWKERACLRVDELQILFANIEEIYEFNSML 599
            :.:.|:...:|     ::|..:.::|..|:..||...:....|.......|..|:|||..|..:|
  Rat   283 TAINKSYYNVVLQNILETEHEYSKELQSVLSTYLWPLQTSEKLSSANTSYLMGNLEEISSFQQVL 347

  Fly   600 LQRLINTGRDP---GRIARCFIDLRDGF-DVYTTYCTSYPEAISLLTKLLQATHTYSL------- 653
            :|.|....:.|   .|:..||:.|.... .:|..||.::|.|:|:||:     |:..|       
  Rat   348 VQSLEECTKSPEAQQRVGGCFLSLMPQMRTLYLAYCANHPSAVSVLTE-----HSEDLGEFMETK 407

  Fly   654 LASTQKLLQHRLPLGSYLLKPVQRILKYHLLLDSLRKHC-----DVKEVVEAHVIMRQVAHNIDQ 713
            .||:..:    |.|.:.|.||..|:.||..||..|.:|.     |.:::.::....:.::....:
  Rat   408 GASSPGI----LVLTTGLSKPFMRLDKYPTLLKELERHMEDYHPDRQDIQKSMTAFKNLSAQCQE 468

  Fly   714 VKRKQEQQSRVKELSGILDGWLGPELTVLGELRQEGLLM-----EQHNKQRLVLLFATMLIITKQ 773
            |::::|.:.::  |:..:..|.|.::..||.:.....:.     .:...:|.:|||..:|::...
  Rat   469 VRKRKELELQI--LTEPIRSWEGDDIKTLGSVTYMSQVTIQCAGSEEKNERYLLLFPNLLLMLSA 531

  Fly   774 KEDGRLQFKTYISQNNLMLSEHLPGEPTSFYVIP--FDEPRHQIKLTARNRDQKRIWTQHIKGVM 836
            ..    :...:|.|..|         ||:...|.  .|...|      ||..:       |.|.|
  Rat   532 SP----RMSGFIYQGKL---------PTTGMTITKLEDSENH------RNAFE-------ISGSM 570

  Fly   837 LEKLDIPMRAKELVYQLGNEEDRTPDRSTWKWSLHSGSNSTPTYLERRNACRRSEIRQRNSKFKR 901
            :|:         ::....|::|      ..:|..|                           .:|
  Rat   571 IER---------ILVSCNNQQD------LHEWVEH---------------------------LQR 593

  Fly   902 KTVANSSSFDSFNESLEQEEESISQAKPSKPLARNNSLDDT-------ALQKLAAAMRYRKRDAA 959
            :|...|.|    |.:::..... |...||.||..::...|:       |...|.....:......
  Rat   594 QTKVTSVS----NPTIKPHSVP-SHTLPSHPLTPSSKHADSKPVALTPAYHTLPHPSHHGTPHTT 653

  Fly   960 VK----EETKTPVKEPCKCDQDAKQDERIEPCSCI-LRDQRSRSAKSQSPVFSYKALKERSKSVP 1019
            :.    |..|||......|.:.|..   :.|.:.: .::..|||.|:...:.. |...||..|  
  Rat   654 ISWGPLEPPKTPKPWSLSCLRPAPP---LRPSAALCYKEDLSRSPKTMKKLLP-KRKPERKPS-- 712

  Fly  1020 RIGGFSLDEE--AEREREQDEDSAASLRGSKPDLSERKTK--------GKGFFEVKQYNHKTMPK 1074
                   |||  ..:.....|:.|..|:..:...:..||:        |...    .:||.....
  Rat   713 -------DEEFAVRKSTAALEEDAQILKVIEAYCTSAKTRQTLNSTWQGTDL----MHNHVLADD 766

  Fly  1075 KIANLKK--QRSSTTKSCSRFYMDLSEFDS----SSSTVLKITESTEELRPDGEIELAQEAATLD 1133
            ..::|..  :|||.::.......:.||:||    .|..:...:.|.:|..|  ::.|.:|...:.
  Rat   767 DQSSLDSLGRRSSLSRLEPSDLSEDSEYDSLWTAHSYRMGSASRSRKESAP--QVLLPEEEKIIV 829

  Fly  1134 ESTQDQYYSPDHETELLSPAEKSKRDAQIVLDLLKNSKEFERIYNKQQKRRE 1185
            |.|:....:...|..|:......|.:.|   :|.:::|:.::...::|:.|:
  Rat   830 EETKSNGQTVIEEKSLVDTVYALKDEVQ---ELRQDNKKMKKSLEEEQRARK 878

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GEFmesoNP_788403.2 RhoGEF 548..712 CDD:459876 46/184 (25%)
PH_PLEKHG1_G2_G3 694..839 CDD:270063 25/151 (17%)
Arhgef7XP_008769602.3 None

Return to query results.
Submit another query.