DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk2 and F20D6.8

DIOPT Version :9

Sequence 1:NP_001286577.1 Gene:Rgk2 / 37132 FlyBaseID:FBgn0085419 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_505105.2 Gene:F20D6.8 / 184726 WormBaseID:WBGene00017637 Length:370 Species:Caenorhabditis elegans


Alignment Length:385 Identity:93/385 - (24%)
Similarity:155/385 - (40%) Gaps:99/385 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 HKPRRRGSSKGGLAYLASRRSSRESMKSACSNASIVSNDDVGPLAFQSSNRGRQRRTSNFLELPV 426
            |:||           .:|..||..:..:|.|...:..|       |..|...|:...|.    |:
 Worm    25 HQPR-----------TSSVSSSNSNSVNANSTMLLSPN-------FSPSPCPRRSLPST----PL 67

  Fly   427 PD-HVRPRVCSLPERPYNPRAS-----DDLY------------------RLRHFSISKGNVVNCG 467
            |: |.|    |||..|..|..|     ::|:                  |||.|.:..|::.:.|
 Worm    68 PNGHRR----SLPPTPPTPAFSSTSEQEELFVNDEQINDEEPEFPIRSTRLRSFDLRDGHIFDKG 128

  Fly   468 DSIISRRSRSNTSVNSTNSRASERSPFEGSCCGAGYANVDSLPAT-PD----DSENLDPPPPARY 527
                .::..|.....|.|              |.|:...|:..|| ||    ||:|.     ...
 Worm   129 ----FQKKPSEKDFLSVN--------------GTGFRRGDNRRATCPDIFLFDSQNC-----LMK 170

  Fly   528 RVVM--LGDAGVGKTALVNQFMTSEYMHTYDASL----VLDDEFGE---KTVSVLLDDEESDMVF 583
            .||:  .|....||.:|.|:      :|.:..|:    |..||.|.   |..:.||:..|..:..
 Worm   171 HVVLRIYGARNCGKKSLANR------IHHFATSMAPERVDPDENGNDYTKMTTFLLNGREVTLEI 229

  Fly   584 IDHPSVEMSVENSLSTYEPHGCVVVFSVVDRSSFRVAEEIINYLWQENYTK--DKAVILVGNKAD 646
            :    :|.::|||.........:|::::.:|.||..|.:|:..:...|...  ...:.|:|||.|
 Worm   230 L----LESTLENSPFRQSKTLYIVMYNMDNRQSFIYATQILERITLANLNNPVPLQLFLIGNKCD 290

  Fly   647 LARARLITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLKEKREKKATASKM 706
            |.|.::|::.|||::|.:....|:|.|:.:..|.:|....|||:::...:|.:.:...:|
 Worm   291 LKRNQVISTNEGKSVARTFKCDFLEVSALLGMNTEETWTTILKELQEPSERRRPSWVERM 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk2NP_001286577.1 RGK 527..742 CDD:206715 50/191 (26%)
small_GTPase 527..694 CDD:197466 48/177 (27%)
F20D6.8NP_505105.2 Ras 170..335 CDD:278499 48/174 (28%)
P-loop_NTPase 172..335 CDD:304359 48/172 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0395
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45775
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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