DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG43066 and Slc6a3

DIOPT Version :9

Sequence 1:NP_001246408.1 Gene:CG43066 / 37129 FlyBaseID:FBgn0262476 Length:721 Species:Drosophila melanogaster
Sequence 2:NP_036826.1 Gene:Slc6a3 / 24898 RGDID:3715 Length:619 Species:Rattus norvegicus


Alignment Length:656 Identity:218/656 - (33%)
Similarity:331/656 - (50%) Gaps:105/656 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GTHGVTIVLTAPQRNSVQSVD--------IPGNEPERAAWSGKMQFFLSIIGYSVGLGNIWRFPY 83
            |...|.::|...| |.||..:        .|....||..||.|:.|.||:||::|.|.|:|||||
  Rat    25 GPREVELILVKEQ-NGVQLTNSTLINPPQTPVEAQERETWSKKIDFLLSVIGFAVDLANVWRFPY 88

  Fly    84 LCQQNGGGAFLIPFMVMLILEGIPLFLIELGIGQRMRLGALGVWNTIHPWLGGIGISSCIVTLFV 148
            ||.:|||||||:|:::.:::.|:|||.:||.:||..|.||.|||. |.|.|.|:|.:..:::.:|
  Rat    89 LCYKNGGGAFLVPYLLFMVIAGMPLFYMELALGQFNREGAAGVWK-ICPVLKGVGFTVILISFYV 152

  Fly   149 ALYYNVIITWVFFYLFNSFRYPLPWSSCPLNGT----------------GFELEECAKSSETTYF 197
            ..:|||||.|...|.|:||...|||..|  |.|                |..|.:...::....:
  Rat   153 GFFYNVIIAWALHYFFSSFTMDLPWIHC--NNTWNSPNCSDAHASNSSDGLGLNDTFGTTPAAEY 215

  Fly   198 WYRTTLDAAPS--MDEPGGLKWWIVLCLMLSWTIVFFIVMKGIQSSGKVVYFTSLFPYIVLTIFF 260
            :.|..|....|  :|:.|..:|.:..||:|...:::|.:.||:::|||||:.|:..||:|||...
  Rat   216 FERGVLHLHQSRGIDDLGPPRWQLTACLVLVIVLLYFSLWKGVKTSGKVVWITATMPYVVLTALL 280

  Fly   261 IRGITLRGAGAGLMHMYTPKVEKLLEPTVWLDAATQVFYSFGLAFGSLIAFGSYNTPKNNCVRDV 325
            :||:||.||..|:....:....:|.|.:||:||||||.:|.|:.||.||||.|||...|||.||.
  Rat   281 LRGVTLPGAMDGIRAYLSVDFYRLCEASVWIDAATQVCFSLGVGFGVLIAFSSYNKFTNNCYRDA 345

  Fly   326 LLVSVCNAVTAIYASVVIFAILGFKATVNVDRCVASNTEILVKNKLLGLNDTQGYEQAMSLLNGT 390
            ::.:..|::|:..:..|:|:.||:.|..:       |..|                         
  Rat   346 IITTSINSLTSFSSGFVVFSFLGYMAQKH-------NVPI------------------------- 378

  Fly   391 ELLRLQLSECSLAHELDNAAEGTGLAFIVFTQAIVELPGAPFWAVLFFTMLLSLGLGSQIGILEG 455
                           .|.|.:|.||.||::.:||..||.:..||.:||.|||:||:.|.:|.:|.
  Rat   379 ---------------RDVATDGPGLIFIIYPEAIATLPLSSAWAAVFFLMLLTLGIDSAMGGMES 428

  Fly   456 MLCTLFD-IDIIKRVKKQHVTGVVCLFCFIVGFIFCTGAGEYWLKMFDSFAGTIGLVVVALMEMI 519
            ::..|.| ..::.|.::....|:| |..|::.....|..|.|...:.|.||....::...|:|.|
  Rat   429 VITGLVDEFQLLHRHRELFTLGIV-LATFLLSLFCVTNGGIYVFTLLDHFAAGTSILFGVLIEAI 492

  Fly   520 AVIFIYGHERFTEDIFQMTGYRPGRYWQWTWRYIGPVIMVCILVSSVVFMVIRNPTYGAWNADLG 584
            .|.:.||.::|::||.||||.||..||:..|:.:.|..::.::|.|:|  ..|.|.|||:     
  Rat   493 GVAWFYGVQQFSDDIKQMTGQRPNLYWRLCWKLVSPCFLLYVVVVSIV--TFRPPHYGAY----- 550

  Fly   585 MIEQKSYPNWVMGIALSMILA-GVLPMPIVFLMRSFQCLKVDLDIHQGSIRRNETTASTKE---- 644
                 .:|:|..  ||..|:| ..:.|..::....|..|       .||.|.....|.|.|    
  Rat   551 -----IFPDWAN--ALGWIIATSSMAMVPIYATYKFCSL-------PGSFREKLAYAITPEKDHQ 601

  Fly   645 MIDNDD 650
            ::|..:
  Rat   602 LVDRGE 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43066NP_001246408.1 SLC6sbd-B0AT-like 55..617 CDD:271364 200/581 (34%)
Slc6a3NP_036826.1 SLC6sbd_DAT1 60..613 CDD:212083 209/620 (34%)
Interaction with TGFB1I1. /evidence=ECO:0000250 560..589 8/35 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.