DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43066 and snf-1

DIOPT Version :9

Sequence 1:NP_001246408.1 Gene:CG43066 / 37129 FlyBaseID:FBgn0262476 Length:721 Species:Drosophila melanogaster
Sequence 2:NP_491491.2 Gene:snf-1 / 172119 WormBaseID:WBGene00004900 Length:617 Species:Caenorhabditis elegans


Alignment Length:669 Identity:145/669 - (21%)
Similarity:263/669 - (39%) Gaps:165/669 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 EPERAAWSGKMQFFLSIIGYSVGLGNIWRFPYLCQQNGGGAFLIPFMVMLILEGIPLFLIELGIG 116
            |..|..|..|::|.:|.:.|...:.|....|.|..:|||.||...:.:::.:..:|..::|:.||
 Worm    18 EEWRDLWPSKIEFIVSAMAYLFAMTNFLNLPKLILENGGVAFAAAYAIVVGVLCMPTMVMEMSIG 82

  Fly   117 QRMRLGALGVWNTIHPWLGGIGISSCIVTLFVA-------------LYYNVIITWVFFYLFNSFR 168
            |......:..:..:.|...|||:|..:.|:.|.             |||       :|:.|::.|
 Worm    83 QVTGRAPVLAFYHLFPVFRGIGVSQILFTMVVLACMTKFLSTLCLFLYY-------YFWTFHAGR 140

  Fly   169 YPLPWSSC---PLNGTGFELEECAKS-----------------SETTYFWYRTTLD-AAPSMDEP 212
            ..|||.:|   |    .|..:.|.::                 :|::...:.|||: .:.|:.:.
 Worm   141 SGLPWLNCKAFP----EFVSQPCREAGSITNITQINNRLNTIQAESSMMQFLTTLERPSESIADF 201

  Fly   213 GGLKWWIVLCLMLSWTIVFFIVMKGIQSSGKVVYFTSLFPYIVLTIFFIRGITLRGAGAGLMHMY 277
            ...::.|::.....|..:|..:..|::..||.|.|..:..:..|.:||:|..||.|. ..::.:|
 Worm   202 KDFQYPILIAQGAIWIAIFVAICFGVRFVGKTVAFVLMLAFSSLLVFFLRSATLGGV-TEILEIY 265

  Fly   278 TPKV--EKLLEPTVWLDAATQVFYSFGLAFGSLIAFGSYNTPKNNCVRDVLLVSVCNAVTAIYAS 340
            ....  |||.:..||..|..|.....|:.:|:.|...||....||.|.|.:.:||.:.:.:...:
 Worm   266 WKATDWEKLADYQVWRLAIEQAILGTGIGYGAFITMSSYMKRSNNLVCDSIFLSVWHLIISFVQT 330

  Fly   341 VVIFAILGFKATVNVDRCVASNTEILVKNKLLGLNDTQGYEQAMSLLNGTELLRLQLSECSLAHE 405
            :.|..|:|:               :.:|   ||::.             ||||.           
 Worm   331 MSIICIVGY---------------LSMK---LGIHP-------------TELLE----------- 353

  Fly   406 LDNAAEGTG-------LAFIVFTQAIVELPGAPFWAVLFFTMLLSLGLGSQIGILEGMLCTLFDI 463
                   ||       ||::.:      ||  ..|:.:..|:               .:||:|.:
 Worm   354 -------TGEDQMWYMLAYVSY------LP--KLWSGVLLTI---------------CICTMFSV 388

  Fly   464 DII------------------KRVKKQHVTGVVCLFCFIVGFIFCTGAGEYWLKMFDSFAGTIGL 510
            ..|                  |..::..:...||||||.:...|.|.||.:..::.........:
 Worm   389 ITILALSVLSTFEDAFGENWSKCCRRFFLALFVCLFCFGLTVYFATNAGRHAYELATRSIKYCTI 453

  Fly   511 VVVALMEMIAVIFIYGHERFTEDIFQMTGYRP----GRYWQWTWRYIGPVIMVCILVSSVVFMVI 571
            ..:...|:.|..:.|...:..:|:..|...|.    |.::.: :.|:.|     ||.:.|.|:..
 Worm   454 YFILTAELFATAWFYCAHKLGKDLHNMMRSRCCSCFGHFFLY-FTYLLP-----ILPAGVAFLNA 512

  Fly   572 RNPTYGAWNADLGMIEQKSYPNWVMGIALSMILAGVLPMPIVFLMRSF-QCLKVDLDIHQGSIRR 635
            .:..:.:::|.   |.:..|..:| |||::|:  .::|:|:.|.|... .|.....| |..:.:|
 Worm   513 LDYKFSSFSAP---IHEWKYSEYV-GIAIAMV--PLIPIPLYFFMTILCACCCKGKD-HAKTCKR 570

  Fly   636 NETTASTKEMIDNDDDDDE 654
            ..|..:.:  :.|....||
 Worm   571 IRTVFAAR--LQNHHHRDE 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43066NP_001246408.1 SLC6sbd-B0AT-like 55..617 CDD:271364 135/626 (22%)
snf-1NP_491491.2 SNF 21..554 CDD:264495 136/628 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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