DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30116 and SKI8

DIOPT Version :9

Sequence 1:NP_725799.1 Gene:CG30116 / 37126 FlyBaseID:FBgn0028496 Length:1922 Species:Drosophila melanogaster
Sequence 2:NP_011302.1 Gene:SKI8 / 852659 SGDID:S000003181 Length:397 Species:Saccharomyces cerevisiae


Alignment Length:321 Identity:65/321 - (20%)
Similarity:121/321 - (37%) Gaps:83/321 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1232 SGRHVH---LMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNLALGEICNSFK 1293
            ||.| |   |..|....::..|      |:...|:.:..|.....||....:....|..:.:..|
Yeast    63 SGLH-HVDVLQAIERDAFELCL------VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 120

  Fly  1294 GHTAPVVKVVVLMDSL---RVISTDRDSMLLVWMAHSGNLLQTIQGPY--KSLSVTNNMRFAVST 1353
            .|:...:|.....|.|   |:::||......:|..|          |:  :|.|:|.|       
Yeast   121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH----------PFADESNSLTLN------- 168

  Fly  1354 NGDNTLKIWSLTQEDE---KYSVSHSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQV-- 1413
                    ||.|.|.:   :..::.|...|..:||...: |.:|..:.::::     .:||.:  
Yeast   169 --------WSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQI-----SELSTLRP 219

  Fly  1414 ---------LVGHSDAVTCVAVSVTNKTQVLSGSKDMN----LILWDLLTGEEVHTLA------- 1458
                     ::.:|:::.  :|..:.:..:|:.:.|.|    :.|::...||.:.:|:       
Yeast   220 LYNFESQHSMINNSNSIR--SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282

  Fly  1459 ------GHLGPVIGVKVSADGSTAVSGSDDKTLIVWETKRGLALTSLQMHVPFTHFDISLE 1513
                  .|...|:.:..:..|.|..|...|..|..|:.|....:|:|.||..    ||.:|
Yeast   283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD----DIEIE 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30116NP_725799.1 AAA_16 359..505 CDD:289934
WD40 repeat 901..937 CDD:293791
WD40 933..1282 CDD:238121 12/52 (23%)
WD40 repeat 942..982 CDD:293791
WD40 repeat 988..1024 CDD:293791
WD40 1022..1484 CDD:225201 55/290 (19%)
WD40 repeat 1029..1064 CDD:293791
WD40 repeat 1071..1106 CDD:293791
WD40 repeat 1112..1147 CDD:293791
WD40 repeat 1216..1252 CDD:293791 7/22 (32%)
WD40 1248..1502 CDD:238121 54/289 (19%)
WD40 repeat 1258..1294 CDD:293791 5/35 (14%)
WD40 repeat 1299..1335 CDD:293791 8/38 (21%)
WD40 repeat 1340..1374 CDD:293791 8/36 (22%)
WD40 repeat 1379..1415 CDD:293791 7/46 (15%)
WD40 repeat 1421..1458 CDD:293791 7/40 (18%)
WD40 repeat 1464..1488 CDD:293791 6/23 (26%)
SKI8NP_011302.1 WD40 13..351 CDD:421866 65/321 (20%)
WD40 repeat 19..60 CDD:293791
WD40 repeat 66..119 CDD:293791 11/59 (19%)
WD40 repeat 124..180 CDD:293791 17/80 (21%)
WD40 repeat 190..224 CDD:293791 7/39 (18%)
WD40 repeat 236..275 CDD:293791 7/40 (18%)
WD40 repeat 294..330 CDD:293791 9/35 (26%)
WD40 repeat 357..391 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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