DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30116 and AT5G50120

DIOPT Version :10

Sequence 1:NP_725799.1 Gene:CG30116 / 37126 FlyBaseID:FBgn0028496 Length:1922 Species:Drosophila melanogaster
Sequence 2:NP_199823.1 Gene:AT5G50120 / 835077 AraportID:AT5G50120 Length:388 Species:Arabidopsis thaliana


Alignment Length:337 Identity:90/337 - (26%)
Similarity:142/337 - (42%) Gaps:77/337 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  1237 HLMRINTPEYQC--TLEGHTAG-VSCLKFAPNGEFLATGSEDRLVHIWNL----------ALGEI 1288
            ||...:.|.:||  ||..|||. :|.|..|  |:.|.|||.|.:|.:||.          :.|::
plant    18 HLTSSSQPLHQCIATLVCHTASYISSLTLA--GKRLYTGSNDGVVRLWNANTLETLAEASSNGDV 80

  Fly  1289 CNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAH-------SGN------LLQTIQGPY-K 1339
            ....:|....|..:|:|.|.|  .:..:|..:.||..:       .|.      .:.||...: |
plant    81 ITGERGGGGAVKSLVILADKL--FTAHQDHKIRVWKINDVVEEDVGGKKYMHLATMPTISDRFAK 143

  Fly  1340 SLSVTNNMR------------------FAVSTNG--------DNTLKIWSLTQED--EKYSVSHS 1376
            .|...|.:.                  .|:|.:|        |.|||||..|...  |.::.:|.
plant   144 CLMPKNQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHD 208

  Fly  1377 DEITCFEISADSVHIISGSRDMSLKVWQATGGK----------LSQVLVGHSDAVTCVAVSVTNK 1431
            |.|....:| ::..|.:||.|..:|||:....:          |..:|..|:..:..:|:|.||.
plant   209 DAINAVALS-ENGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHNSGINALALSGTNG 272

  Fly  1432 TQVLSGSKDMNLILWDLLTGEE---VHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWE--TK 1491
            :.:.||..|.::::|:...|.:   |..|.||...|:.:.|.:|  ...|||.|||:.:|:  .|
plant   273 SLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESVLCLAVVSD--ILCSGSADKTVRLWKCSAK 335

  Fly  1492 RGLALTSLQMHV 1503
            ....|..|:.|:
plant   336 DYSCLAMLEGHL 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30116NP_725799.1 WD40 <897..1057 CDD:441893
WD40 repeat 901..937 CDD:293791
WD40 repeat 942..982 CDD:293791
WD40 repeat 988..1024 CDD:293791
WD40 991..1491 CDD:441893 86/323 (27%)
WD40 repeat 1029..1064 CDD:293791
WD40 repeat 1071..1106 CDD:293791
WD40 repeat 1112..1147 CDD:293791
WD40 repeat 1216..1252 CDD:293791 7/16 (44%)
WD40 repeat 1258..1294 CDD:293791 13/45 (29%)
WD40 repeat 1299..1335 CDD:293791 10/48 (21%)
WD40 repeat 1340..1374 CDD:293791 13/61 (21%)
WD40 repeat 1379..1415 CDD:293791 10/45 (22%)
WD40 repeat 1421..1458 CDD:293791 10/39 (26%)
WD40 repeat 1464..1488 CDD:293791 9/23 (39%)
AT5G50120NP_199823.1 WD40 <27..384 CDD:441893 87/328 (27%)
WD40 repeat 42..86 CDD:293791 13/45 (29%)
WD40 repeat 91..135 CDD:293791 9/45 (20%)
WD40 repeat 169..204 CDD:293791 11/34 (32%)
WD40 repeat 211..254 CDD:293791 10/43 (23%)
WD40 repeat 262..302 CDD:293791 10/39 (26%)
WD40 repeat 308..330 CDD:293791 9/23 (39%)
WD40 repeat 350..382 CDD:293791
Blue background indicates that the domain is not in the aligned region.

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