DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30116 and Apaf1

DIOPT Version :9

Sequence 1:NP_725799.1 Gene:CG30116 / 37126 FlyBaseID:FBgn0028496 Length:1922 Species:Drosophila melanogaster
Sequence 2:NP_076469.1 Gene:Apaf1 / 78963 RGDID:620575 Length:1249 Species:Rattus norvegicus


Alignment Length:1481 Identity:279/1481 - (18%)
Similarity:488/1481 - (32%) Gaps:481/1481 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 LLRRTQIEREVSQAMA---LTSEKILAVFRERAAQCSKGDVEAAERLRKIKDELTMNLSTDNHTT 273
            |..:..:|:::..:..   :.|..:|.|..|...:......:.|..|.|      |.|:.||:..
  Rat    10 LQHKEALEKDIKTSYIMDHMISNGVLTVVEEEKVKSQATQYQRAAALIK------MILNKDNYAY 68

  Fly   274 LVVPGSAASEAIDPDNEDHESY-------------LSKFKNKVTD------KLRLLIEAHITNDP 319
            :....:..          ||.|             :|....|.||      ...:|.|..:...|
  Rat    69 ISFYNALL----------HEGYKDLAGLLHSGLPLVSSSSGKDTDGGNTSFVRTVLCEGGVPQRP 123

  Fly   320 DVIKGRKKTVQEIFH---------------------EHATHLRILREHTDSDALVES-------- 355
            .:...|||.|..|..                     :.......:|:|    ||:|.        
  Rat   124 VIFVTRKKLVSAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDH----ALLEGCFSGGVHW 184

  Fly   356 -RVPQQLRQNLMANFRNGSRHAPYFLCGADGSGKSAILCHLYGQVGSWFGSTRVHRVIRFAK--- 416
             .:.:|.:..|:...:|                    ||...||..|:  |.|:...|..||   
  Rat   185 VSIGKQDKSGLLMKLQN--------------------LCTRLGQEESF--SQRLPLNIEEAKDRL 227

  Fly   417 ------ATPRSAYNLE------LLRVICQQISIIFNIPEGYLPKDASFDPLYINTWFQNLLRRVE 469
                  ..|||...|:      :|:....|..|:....:..: .|:...|.|:......|   .:
  Rat   228 RVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSV-TDSVMGPKYVIPVESGL---GK 288

  Fly   470 DMGNDVLFLFI----DDL----HLL------NPLDCDIVTALSWLPTSLP--WNVQIICSSTTPV 518
            :.|.::|.||:    :||    |.:      :||   :|:.:..|....|  |...:        
  Rat   289 EKGLEILSLFVNMKKEDLPVEAHSIIKECKGSPL---VVSLVGALLRDFPNRWAYYL-------- 342

  Fly   519 EQLKFTPMQRDRFKSIEYQFDLNMGDYATKLKIPPQCIPGDVSFALYVEQQFDQLERHYGRQAVG 583
            .||:....:|.| ||..|.::..                 |.:.::.||...:.::.:|     .
  Rat   343 RQLQNKQFKRIR-KSSSYDYEAL-----------------DEAMSISVEMLREDIKDYY-----T 384

  Fly   584 DLA---------SYITCSEYGLSETELLELLMPTDDPESLIETKNGHFSFATFKKIHREMDLLLL 639
            ||:         :.:.|..:.|...|:.::|....:...|...:||. ||..:            
  Rat   385 DLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGK-SFCYY------------ 436

  Fly   640 LHDKIMSGKVLIQWRHNYCASVAKRRYMDVQRTRSLHCELANLFFPQDEDESTLENESNRSESKS 704
            |||                                |..:..              .|.|||:   
  Rat   437 LHD--------------------------------LQVDFL--------------TEKNRSQ--- 452

  Fly   705 VISLKDRDREKDSLSAVSAVSAGRKSSSTH----HNDDTSTFYNPIAADVSYSMRHVEESWHHLM 765
               |:|..|:        .|:..::....|    ..:|...:||.:|..::.:..|.|       
  Rat   453 ---LQDLHRK--------MVTQFQRYHQPHTLSPGQEDCMYWYNFLAYHMASAGMHKE------- 499

  Fly   766 RSDDTTRFKQIAVC----NFDFLLAAVQTVSISYL-------RCLIEHVRCYILDRDIELIYYTI 819
                        :|    :.|::.|..:.|..::|       |.:::...|.:.:...|.    :
  Rat   500 ------------LCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVCENFQEF----L 548

  Fly   820 RKSSDVLTRDP----MQLG------SQLISWLRPISEHDDDDNSLLSMTVRSATAWCDGYAVPLL 874
            ..:..:|.|.|    :|||      |::....:..::.:.|       |.|....|.:...:..|
  Rat   549 SLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVD-------TGRLYLEWINKKTIKNL 606

  Fly   875 VPLTGWLPAPLPSQIRTMT--------------VSGTGCIRA--VWLAPSKQHLI---------- 913
            ..|.          :|..|              ::..|..:.  |:.|.:.:.|:          
  Rat   607 SRLV----------VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL 661

  Fly   914 ----------LATSSGD--VQQWHIMSNSLDHIFKGHTAAVTCLLVAPQSDSELLLTGSEDATVL 966
                      :||.|.|  |:.|...:..|.|.::.|:..|.|.....:|:..||.|||.|:.:.
  Rat   662 CCAFSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHSEQVNCCHFTNKSNHLLLATGSNDSFLK 726

  Fly   967 VWHVGLRERRAHIKNAHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHR----- 1026
            :|.:..:|.| :....||..:|......::.|:.|.|.|.::.:.|:.|...:..|...|     
  Rat   727 LWDLNQKECR-NTMFGHTNSVTHCRFSPDDELLASCSADGTLKLWDVRSANEKKSINVKRFFLSS 790

  Fly  1027 -GPVSGIVVAGACDVLISGGLDRTICVWDLDNFTLLNTMQMTSAVLRIDISWNSVFLLALCEDNA 1090
             .|...:.|...|            |.|..|...::  :...:.||.:||..:.:.         
  Rat   791 EDPPEDVEVIVKC------------CSWSADGDRII--VAAKNKVLLLDIHTSGLL--------- 832

  Fly  1091 LYVRTLATGKELHTLKGHKSKIR--------SISIGKDSQRCV-VGCDDTRALIYDMHAGKLVRS 1146
                     .|:||  ||.|.|:        .:::...||.|| :...|:|..:.|..       
  Rat   833 ---------TEIHT--GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRVKVADCR------- 879

  Fly  1147 LPPNPGPVTAVHAM----DNDDFLVTVGGNKITFYSFR----NEELYVNPYSRHPRRKRSLKRHA 1203
                 |.::.||.:    |...||.......|..:..|    |..:.             ||:..
  Rat   880 -----GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETRKVCKNSAIV-------------LKQEI 926

  Fly  1204 QAQRSPSTTLPPITCFDLSRDSQQMAIASGRHVHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEF 1268
            ......:..:  :...|..|..|.:|..:|:..:|     ||.|         |||...:|:.|:
  Rat   927 DVVFQENEMM--VLAVDNIRGLQLIAGKTGQIDYL-----PEAQ---------VSCCCLSPHLEY 975

  Fly  1269 LATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLV--WMAHSGNLL 1331
            :|.|.|:..:.|..|....:.:|..||...|..:....|...:||:..||::.|  |.......|
  Rat   976 VAFGDEEGAIKIIELPNNRVFSSGIGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTEEYVFL 1040

  Fly  1332 QTIQGPYKSLSVTNNMRFAVSTNGDNTLKIWS-LTQEDEKYSVSHSDEITCFEISADSVHIISGS 1395
            |..|...|...:..:.|. :|.:.|.|:|:|: :|...|:....|...:....||:|:....|.|
  Rat  1041 QAHQETVKDFRLLRDSRL-LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1104

  Fly  1396 RDMSLKVWQATGGKLSQVLVGHSDAVTCVAVSVTNKTQVLSGSKDMN--LILWDLLTGEEVHTLA 1458
            .|.:.|:|..........|.||:..|.|.|.|:..   :|..:.|.|  :.:|::..|:.:|..|
  Rat  1105 ADKTAKIWSFELPSPLHELKGHNSCVRCSAFSLDG---ILLATGDDNGEIRIWNVSDGQLLHLCA 1166

  Fly  1459 GHLGPVIGVKVSADGSTAVSG--------SDDKTLIV--------WETKRG 1493
                     .:|.:..||..|        |.|:.::|        |....|
  Rat  1167 ---------PISIEEGTATHGGWVTDVCFSPDRKMLVSAGGYLKWWNVVTG 1208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30116NP_725799.1 AAA_16 359..505 CDD:289934 35/174 (20%)
WD40 repeat 901..937 CDD:293791 11/59 (19%)
WD40 933..1282 CDD:238121 78/371 (21%)
WD40 repeat 942..982 CDD:293791 12/39 (31%)
WD40 repeat 988..1024 CDD:293791 8/35 (23%)
WD40 1022..1484 CDD:225201 108/497 (22%)
WD40 repeat 1029..1064 CDD:293791 5/34 (15%)
WD40 repeat 1071..1106 CDD:293791 6/34 (18%)
WD40 repeat 1112..1147 CDD:293791 8/43 (19%)
WD40 repeat 1216..1252 CDD:293791 9/35 (26%)
WD40 1248..1502 CDD:238121 65/267 (24%)
WD40 repeat 1258..1294 CDD:293791 10/35 (29%)
WD40 repeat 1299..1335 CDD:293791 10/37 (27%)
WD40 repeat 1340..1374 CDD:293791 8/34 (24%)
WD40 repeat 1379..1415 CDD:293791 8/35 (23%)
WD40 repeat 1421..1458 CDD:293791 10/38 (26%)
WD40 repeat 1464..1488 CDD:293791 7/39 (18%)
Apaf1NP_076469.1 CARD_APAF1 7..92 CDD:260034 16/97 (16%)
AAA_16 126..245 CDD:289934 27/144 (19%)
NB-ARC 129..414 CDD:279299 63/348 (18%)
WD40 <598..685 CDD:225201 13/96 (14%)
WD40 607..910 CDD:238121 70/359 (19%)
WD 1-1 613..652 5/38 (13%)
WD40 repeat 623..655 CDD:293791 4/31 (13%)
WD40 653..1038 CDD:225201 97/460 (21%)
WD 1-2 655..694 7/38 (18%)
WD40 repeat 661..697 CDD:293791 8/35 (23%)
WD 1-3 697..738 13/41 (32%)
WD40 repeat 702..740 CDD:293791 12/38 (32%)
WD 1-4 741..780 9/38 (24%)
WD40 repeat 747..789 CDD:293791 9/41 (22%)
WD 1-5 796..837 10/72 (14%)
WD40 repeat 801..837 CDD:293791 9/67 (13%)
WD 1-6 838..877 10/38 (26%)
WD40 repeat 843..882 CDD:293791 9/50 (18%)
WD 1-7 880..910 7/29 (24%)
WD40 repeat 885..909 CDD:293791 6/23 (26%)
Interpropeller linker. /evidence=ECO:0000250 910..921 2/10 (20%)
WD 2-1 922..958 7/37 (19%)
WD 2-2 959..998 14/52 (27%)
WD40 961..1235 CDD:238121 67/270 (25%)
WD40 961..>1235 CDD:225201 67/270 (25%)
WD40 repeat 964..1001 CDD:293791 11/36 (31%)
WD 2-3 1001..1040 10/38 (26%)
WD40 repeat 1006..1030 CDD:293791 6/23 (26%)
WD 2-4 1042..1080 10/38 (26%)
WD40 repeat 1048..1082 CDD:293791 9/34 (26%)
WD 2-5 1083..1122 9/38 (24%)
WD40 repeat 1089..1124 CDD:293791 8/34 (24%)
WD 2-6 1125..1164 11/41 (27%)
WD40 repeat 1130..1174 CDD:293791 12/55 (22%)
WD 2-7 1176..1213 6/33 (18%)
WD40 repeat 1181..1203 CDD:293791 3/21 (14%)
WD 2-8 1214..1249
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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