DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30116 and apaf1

DIOPT Version :9

Sequence 1:NP_725799.1 Gene:CG30116 / 37126 FlyBaseID:FBgn0028496 Length:1922 Species:Drosophila melanogaster
Sequence 2:NP_571683.1 Gene:apaf1 / 58131 ZFINID:ZDB-GENE-000616-4 Length:1261 Species:Danio rerio


Alignment Length:1605 Identity:298/1605 - (18%)
Similarity:515/1605 - (32%) Gaps:589/1605 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 QLLPTK--IDEDIFSAVLADQQTS-----ADHEAMLVK---WYERDASQTQRQLKQDYR------ 168
            :||.:|  :::||.::.|.|...|     .|.||.::.   ..|:..:..:..|::|.|      
Zfish     8 RLLRSKATLEQDIKASYLMDHMISDGVLTNDEEAKVLSKATRKEQAVALLETLLRKDNRAYISFY 72

  Fly   169 -------------LMNVDAWLAESQRMQSF---LEQAFQSLLQGSGASGRSPDFMERVQLLRRTQ 217
                         |::.|..|...:..:||   :..:.|::|...|...|...|:.|..||   .
Zfish    73 NALIRESYGDLASLLHSDLPLLSPEGEKSFADGVSPSVQAILSVGGVPQRPVVFVSRPPLL---N 134

  Fly   218 IEREVSQ------------AMALTSEKILA--VFRERA---------------AQCSKGDVEAAE 253
            :.||:..            .||.:.:.::|  |.|:|:               .||.:.|:  ..
Zfish   135 LIREMLYQLRDTPGWVTVFGMAGSGKSVMAAEVVRDRSLIKECFPDGVHWLSVGQCERADL--LV 197

  Fly   254 RLRKIKDELTMNLSTDNHTTLVVPGSAASEAIDPDNEDHESYLSKFKNKVTDKLRLLI------E 312
            |::.:...|....|:|   |...|.|...||                   .::||.|:      .
Zfish   198 RMQSLCFRLEQCQSSD---TSQRPPSTVEEA-------------------KERLRFLMLRRFPRS 240

  Fly   313 AHITNDP-DVIKGRKKTVQEIFHEHATHLRIL-----REHTDS------DALVESRVPQQLRQNL 365
            ..|.:|. |....|...:|         .|:|     |..|||      :..||:.:.::....:
Zfish   241 LLILDDVWDSSSLRSFDIQ---------CRVLLTTRNRALTDSVSGVRYEVPVENGLDEEKALEI 296

  Fly   366 MANFRNGSRH-----APYFLCGADGSGKSAILCHLYGQV-----GSWFGSTRVHRVIRFAKATPR 420
            :|.:.||..|     |...:....|   |.::..|.|.:     ..|....|..:..:|.:....
Zfish   297 LALYVNGKMHKLPEQARSIVSECKG---SPLVVSLIGALLREFPDRWSYYLRQLQQKQFKRIRKS 358

  Fly   421 SAYNLELLRVICQQISIIFNIPEGYLPKDASFDPLYINTWFQNLLRRVEDMGNDVLFLFIDDLHL 485
            |:|:.|.|.                ...|||...|  ....|.|.|.:..|..|:          
Zfish   359 SSYDYEALD----------------QAMDASLQVL--EAEHQELYRDLSVMQKDI---------- 395

  Fly   486 LNPLDCDIVTALSWLPTSLPWNVQIICSSTTPVEQLKFTPMQRDRFKSIEYQFDLNMGDYATKLK 550
              .:...:::.|        |.:::     ..||.:    :|....||:.:: |.|...|...|.
Zfish   396 --KVPAKVLSVL--------WGLEL-----EEVEDV----LQEFVNKSLLFR-DCNQRPYRYYLH 440

  Fly   551 IPPQCIPGDVSFALYVEQQFDQL-----------ERHYGRQ----AVGDLASYITCSEY-----G 595
                    |:......||..||:           :|.|.::    |..|...:.....|     |
Zfish   441 --------DLQLDFLAEQNRDQIAELHKKMVRQYQRFYSKRPPDSADKDSLYWYQFIPYHMAKAG 497

  Fly   596 LSETELLELLMPTDDPESLIETKNGHFSFATFKKIHREMDLLLLLHDKIMSGKVL--------IQ 652
            ||: ||..|:                ||....|:..|.|....|::|.:..|::|        :|
Zfish   498 LSK-ELYSLM----------------FSLDWVKEKARIMGSAHLINDYVEYGEILDKENSEVRVQ 545

  Fly   653 WR-------HNYCASVAKRRYMDVQRTRSLHCELANLFFPQDEDESTLENESNRSESKSVISLKD 710
            ::       |:    :.:|.:.||.:......:.:.::     .::.::.:...|..:..::..:
Zfish   546 FQEFLSLNGHH----LEQRPFPDVVQLALSQPDRSEVY-----RQALMQAQKRASRGQIYLNWVN 601

  Fly   711 RDRE---------------------KDSLSAVSAVSAGR-----KSSS--------THHNDDTST 741
            ::.|                     ||. |.:::..|.:     ||:|        .|..|....
Zfish   602 KNIEEGLSRLVMHPHQGAVYYACFSKDG-SKIASCGASKALRVFKSTSGEKLLELQAHEEDVLCC 665

  Fly   742 FYNP-------IAADVSYSMRHVEESWHHLMRSDDTTRFKQIAVCNFD-----FLLAAVQTVSIS 794
            .::|       .|:|....:.:||..  .|:|..:....:||..|.|.     .|||.       
Zfish   666 AFSPDDRHIATCASDRKVKLWNVERG--VLIREFEVEHEEQINHCQFTNTGRRVLLAT------- 721

  Fly   795 YLRCLIEHVRCYILDRDIELIYYTIRKSSDVLTR----DPMQLGSQ--LISWLRPI-----SEHD 848
                      |                |:|..|.    :|.:..||  :...:.|:     |.:|
Zfish   722 ----------C----------------SNDKFTNTRLWNPNKKTSQNTMFGHMEPVNHCCFSPND 760

  Fly   849 ------DDDNSLLSMTVRSATAW----CDGY------AVPLLVPLTGWL---------------- 881
                  ..|.||....|.||..|    .|.:      .:..:|..:.|.                
Zfish   761 LYLATSSSDGSLKLFEVSSANEWKSIDVDSFFPESDEEIKAMVKCSTWSADGSQIICAARNTVFV 825

  Fly   882 ----PAPLPSQIRTMTVSGTGCIRAVWLAPSKQHLILATSSGDVQQWHIMSNSLDHIFKGHTAAV 942
                .:.|..:::|..:|   .|:.....|:...|.:|.|...|:.|:..|:.......||.:.|
Zfish   826 FDVETSDLLLKLKTSRLS---TIQFCHACPNSSLLAVALSHYTVELWNFESSKKKAECSGHLSWV 887

  Fly   943 TCLLVAPQSDSELLLTGSEDATVLVWHVGLRERRAHIKNAHTAPITGVAAGANNTLIISSSEDAS 1007
            .|:..:|  |..|||:.|:|.|:.:|...    |.|..:|        .|...:|.::||..||:
Zfish   888 HCVQFSP--DGSLLLSSSDDQTIRLWETD----RVHTSSA--------VALKRDTDVLSSHSDAT 938

  Fly  1008 IAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLDNFTLLNTMQMTSAVLR 1072
            |...| :|.:|:                     ::||.                     |.||  
Zfish   939 IIAPD-SSNRLQ---------------------VLSGS---------------------TGAV-- 958

  Fly  1073 IDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYD 1137
                                   :...:||      .|:||...|.:::....:|.:|       
Zfish   959 -----------------------VLESEEL------SSRIRCSCISRNAAFVALGSED------- 987

  Fly  1138 MHAGKLVRSLPPNPGPVTAVHAMDNDDFLVTVGGNKITFYSFRNEELYVNPYSRHPRRKRSLKRH 1202
                          |.|..:..                                 |..|.|:|  
Zfish   988 --------------GTVQVIEV---------------------------------PSSKASVK-- 1003

  Fly  1203 AQAQRSPSTTLPPITCFDLSRDSQQMAIASGRHVHLMRINTPEYQCTLEGHTAGVSCLKFAPNGE 1267
                                                           |.|||..|...:|..:.|
Zfish  1004 -----------------------------------------------LSGHTKTVHHCQFTDDCE 1021

  Fly  1268 FLATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDSL--RVISTDRDSMLLVWMAHSGNL 1330
            .|.|.|||..:.:|....|| |...:||..||.|..:|..|.  .:.|...|..:.||....|.:
Zfish  1022 ILITSSEDSTIRVWKWRTGE-CMVLQGHMEPVRKFHLLSSSSSPHLFSWSFDGTVKVWDLTRGQM 1085

  Fly  1331 LQTI---QGPYKSLSVTNNMRFAVSTNGDNTLKIWSLTQEDEKYSV-SHSDEITCFEISADSVHI 1391
            ||.:   :|...|..|:::.|...:|:.:.|.|:||.......:.: .|.|.:.....|.|:..:
Zfish  1086 LQDLVCHEGAVLSCDVSSDGRLFATTSANRTAKVWSSASWKMLFLLEGHKDCVRSCRFSWDNKRL 1150

  Fly  1392 ISGSRDMSLKVWQATGGKLSQVLVG---------HSDAVTCVAVSVTNKTQVLSGSKDMNLILWD 1447
            .:|..:..:::|....|.|.::...         |:..||.:..|..|:..|.:..   .:..|.
Zfish  1151 ATGDDNGEIRLWSMLDGALLKICPRDTKDSMNSYHAGWVTDLHFSPDNRVLVSTAG---YIKWWS 1212

  Fly  1448 LLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWETKR 1492
            :.:||.:.|.....|.:..:.||.|.||.:  :.|...|::..||
Zfish  1213 VESGEALQTFYTMGGNLKKIHVSPDFSTFI--TVDSIGILYILKR 1255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30116NP_725799.1 AAA_16 359..505 CDD:289934 26/155 (17%)
WD40 repeat 901..937 CDD:293791 7/35 (20%)
WD40 933..1282 CDD:238121 57/348 (16%)
WD40 repeat 942..982 CDD:293791 13/39 (33%)
WD40 repeat 988..1024 CDD:293791 10/35 (29%)
WD40 1022..1484 CDD:225201 83/476 (17%)
WD40 repeat 1029..1064 CDD:293791 2/34 (6%)
WD40 repeat 1071..1106 CDD:293791 2/34 (6%)
WD40 repeat 1112..1147 CDD:293791 5/34 (15%)
WD40 repeat 1216..1252 CDD:293791 1/35 (3%)
WD40 1248..1502 CDD:238121 67/260 (26%)
WD40 repeat 1258..1294 CDD:293791 11/35 (31%)
WD40 repeat 1299..1335 CDD:293791 11/40 (28%)
WD40 repeat 1340..1374 CDD:293791 8/34 (24%)
WD40 repeat 1379..1415 CDD:293791 6/35 (17%)
WD40 repeat 1421..1458 CDD:293791 9/36 (25%)
WD40 repeat 1464..1488 CDD:293791 7/23 (30%)
apaf1NP_571683.1 DD 7..92 CDD:301326 17/83 (20%)
NB-ARC 132..411 CDD:279299 65/360 (18%)
P-loop_NTPase 150..297 CDD:304359 34/179 (19%)
WD 1 615..654 7/39 (18%)
WD40 616..912 CDD:238121 66/336 (20%)
WD40 repeat 625..657 CDD:293791 7/32 (22%)
WD40 641..1042 CDD:225201 110/630 (17%)
WD 2 657..696 8/40 (20%)
WD40 repeat 663..699 CDD:293791 7/37 (19%)
WD 3 700..743 14/75 (19%)
WD40 repeat 705..745 CDD:293791 13/72 (18%)
WD 4 746..785 10/38 (26%)
WD40 repeat 752..796 CDD:293791 10/43 (23%)
WD 5 798..836 3/37 (8%)
WD40 repeat 803..841 CDD:293791 4/37 (11%)
WD 6 840..879 9/41 (22%)
WD40 851..1256 CDD:225201 119/602 (20%)
WD40 877..1212 CDD:238121 98/529 (19%)
WD 7 882..921 15/44 (34%)
WD40 repeat 887..911 CDD:293791 10/25 (40%)
WD40 repeat 960..1005 CDD:293791 14/153 (9%)
WD 8 964..1003 13/98 (13%)
WD 9 1006..1045 15/39 (38%)
WD40 repeat 1011..1046 CDD:293791 12/35 (34%)
WD 10 1047..1088 13/40 (33%)
WD 11 1091..1130 9/38 (24%)
WD40 repeat 1096..1132 CDD:293791 8/35 (23%)
WD 12 1133..1172 8/38 (21%)
WD40 repeat 1138..1162 CDD:293791 3/23 (13%)
WD 13 1184..1223 10/41 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.