DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30116 and rig

DIOPT Version :10

Sequence 1:NP_725799.1 Gene:CG30116 / 37126 FlyBaseID:FBgn0028496 Length:1922 Species:Drosophila melanogaster
Sequence 2:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster


Alignment Length:1073 Identity:180/1073 - (16%)
Similarity:329/1073 - (30%) Gaps:408/1073 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   810 RDIELIYYTIRKSSDVLTRDPMQLGSQLISWLRPISEHDDDDNSLLSMTVRSATAWCDGYAVPLL 874
            ||:.::::|              ..|.|:|:|.        :.::|||.......:|        
  Fly   113 RDVRVVHHT--------------TNSVLMSYLA--------NGNILSMDASDLVIYC-------- 147

  Fly   875 VPLTGWLPAPLPSQIRTMTVSGTGCIRAVWLAPSKQHLIL-------------ATSSGDVQQWHI 926
                              ..|.|.|.|:.:::|....|.:             .|:.|:|....:
  Fly   148 ------------------VASNTYCRRSTFISPRNHQLTMVRCSPYNDNLFAVGTAMGNVLVCDL 194

  Fly   927 MSNSLDHIFKGHTAAVTCLLV-------------------------------------------- 947
            ...::.:.|.||.|.: |.|.                                            
  Fly   195 RKMNIVYKFHGHKAPI-CGLAWREVPAAEDEKTNNLALSAEEWRSRNGGQEEKPKTKPPPLTKSK 258

  Fly   948 APQSD-------------------SELLLTGSED-------------ATVLVWHVGLRERRAHI- 979
            |.:||                   :|.....|||             |.||.:.......:|.: 
  Fly   259 AAESDDPFDIYNFDHLEYEFGAPIAERRRKSSEDCGGEFVGLEKPAGAAVLDFVEACESVKAELL 323

  Fly   980 ------KNAH-------------TAPITGVAA------------GANNTLIISSSEDASIAITDL 1013
                  |..|             |.|::..:.            |:...:..|||.|.:: |.|.
  Fly   324 ASRQEDKTQHVEVTLHDCEPTKPTGPLSDASTISNKNDASDSTEGSLEVIQYSSSSDDAV-IVDG 387

  Fly  1014 ASGKLRHRITHH----------------RGPVSGIVVAGACDVLISGGLDRTICVWDLDNFTLLN 1062
            .:.|.:..:.||                ..|.|.:.|..|...       .||      :.|.:|
  Fly   388 EAAKPKREVLHHIYHQAEVHASGTPQTKSEPQSNLQVVPAISA-------ETI------SLTSVN 439

  Fly  1063 TMQMTSAVLRID-----ISWNSVFLLALCEDNA------LYVRTLATGK--ELHTLKGH------ 1108
            :..:.:.::.||     :.||:         |.      .|.::...||  .::.|..|      
  Fly   440 STHLETLLVSIDGDEVMMIWNT---------NTGAHAGKNYSKSKTAGKLNNVYWLNNHVIVSLS 495

  Fly  1109 -----------KSKIRSISIGKD-SQRCVV------GCDDTRALIYDMHAGKLVRSLPPNPGPVT 1155
                       :.|:....|.|| |..|.:      .||.::.:|:.....:.:..:.|..|.:.
  Fly   496 RHQLFFWSVEFERKMLRYKISKDKSHSCHLQDIVSFACDSSKEMIWLCRNNRQIGMMNPKTGRMA 560

  Fly  1156 AVHAMDNDDFLVTVGGNKITFYSFRNEELYVNPYSRHPRRKRSLKRHAQAQRSPSTTLPPITCFD 1220
                    ||..||.      :..|                      |.|:           |.|
  Fly   561 --------DFYGTVA------FGVR----------------------AMAE-----------CPD 578

  Fly  1221 LSRDSQQMAI-ASGRHVHLMRINTPEYQCTLEGH---TAGVSCLKFAPNGEFLATGSED------ 1275
               |..::|: .|.|.|....|:.....|.....   ::.|.||.::||...||.|:.|      
  Fly   579 ---DMNKIALGCSDRRVAFFDISKLTTSCLPIDSVYVSSNVYCLAWSPNCLELAFGTFDGTVGIL 640

  Fly  1276 -----------RLVH-------IW---------NLALGEICNSFKGHTAPVV-------KVVVLM 1306
                       |..|       :|         |..|| ..:..|....|.:       ..:.:.
  Fly   641 DVERMKVKTHLRTPHKKEVYSLVWQDHFIYFIVNRVLG-FFDLRKSKIEPTIVNCISRPSYLSIR 704

  Fly  1307 DSLRVISTDRDSMLLVWMAHSGNLLQTIQGPYKSLS------VT-------NNMRFAVSTNGDNT 1358
            ||...:.|| |.:|.:....||  ::....|:...|      ||       ::.:||||.| |.:
  Fly   705 DSFLFVGTD-DGLLQIHERDSG--MEKSWSPFIRQSALFARYVTDIAWCPLDSNKFAVSGN-DRS 765

  Fly  1359 LKIWSLTQEDEKYSVSHS-------DEITCFEISADSVHI-----ISGSRDMSLKVWQATGGKLS 1411
            :.:......:..:...|:       ..||....|....|:     |.|    .:.:|.....:..
  Fly   766 VYVMEFQPTERNWKTLHTFTANTEKASITSMRWSHTQKHLLLTFHIEG----KVCLWNCNAPEKP 826

  Fly  1412 QVLVGHSDAVTCVAVSVTNKTQVLSGSKDMNLILWDL---LTGEEVHTLAGHLGPVIGVKVSADG 1473
            .:.:.:...:.|.....||:..::...|.:::.|.|:   |.|:| .::...:..::.||.::..
  Fly   827 PLTITYHCPMWCGMFLPTNENIIMCSGKALSVELIDIKDALEGDE-KSICPKVDALLNVKWASKS 890

  Fly  1474 ST-----AVSGSDDKTLIVWETKRGLALTSLQMHVPFTHFDISLEVSRVLVQLVDSYNLPV--IC 1531
            .|     .::.::.|     ..:|.....:.::.|...:.| ..::...:..::|:   |.  .|
  Fly   891 LTQPYAPVLTAAEKK-----RQRRDQRKAAAKLEVDVANKD-QKKIQESVTAVIDN---PTNDKC 946

  Fly  1532 LHNTPAQYVKLPTYSGPSKDVEDLRPQGPKRQMKRLLK-KEVSLDTYTWQKKYGHLTSSVMMAQV 1595
            ...||.:.:         .:...|..:...|..|...| ||.|.|::|..:...:||...:....
  Fly   947 TQETPVEEM---------LEALSLDKEQNNRSAKECPKCKEQSPDSFTHSRTCLYLTQKELNKSA 1002

  Fly  1596 DERLKRRFSV-SASMEE---ISKIAETKTGASQ 1624
            .|:|....:. ||.:::   |||:..:|..|.:
  Fly  1003 LEKLAIVLTEDSAKIDKSVLISKLFSSKVMAKE 1035

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30116NP_725799.1 WD40 <897..1057 CDD:441893 45/296 (15%)
WD40 repeat 901..937 CDD:293791 7/48 (15%)
WD40 repeat 942..982 CDD:293791 14/122 (11%)
WD40 repeat 988..1024 CDD:293791 8/47 (17%)
WD40 991..1491 CDD:441893 111/641 (17%)
WD40 repeat 1029..1064 CDD:293791 7/34 (21%)
WD40 repeat 1071..1106 CDD:293791 8/47 (17%)
WD40 repeat 1112..1147 CDD:293791 8/41 (20%)
WD40 repeat 1216..1252 CDD:293791 9/36 (25%)
WD40 repeat 1258..1294 CDD:293791 14/68 (21%)
WD40 repeat 1299..1335 CDD:293791 8/42 (19%)
WD40 repeat 1340..1374 CDD:293791 9/46 (20%)
WD40 repeat 1379..1415 CDD:293791 7/40 (18%)
WD40 repeat 1421..1458 CDD:293791 9/39 (23%)
WD40 repeat 1464..1488 CDD:293791 4/28 (14%)
rigNP_611499.3 WD40 repeat 116..160 CDD:293791 13/91 (14%)
WD40 repeat 167..204 CDD:293791 4/36 (11%)
WD40 446..719 CDD:475233 60/333 (18%)
WD40 613..874 CDD:475233 52/270 (19%)
WD40 repeat 617..654 CDD:293791 9/36 (25%)
WD40 repeat 659..691 CDD:293791 6/32 (19%)
WD40 repeat 693..732 CDD:293791 8/41 (20%)
WD40 repeat 744..785 CDD:293791 9/41 (22%)
WD40 repeat 793..831 CDD:293791 7/41 (17%)
WD40 repeat 838..861 CDD:293791 4/22 (18%)

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