DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30116 and Rbcn-3B

DIOPT Version :10

Sequence 1:NP_725799.1 Gene:CG30116 / 37126 FlyBaseID:FBgn0028496 Length:1922 Species:Drosophila melanogaster
Sequence 2:XP_061518785.1 Gene:Rbcn-3B / 3291629 VectorBaseID:AGAMI1_004638 Length:1473 Species:Anopheles gambiae


Alignment Length:1324 Identity:248/1324 - (18%)
Similarity:426/1324 - (32%) Gaps:499/1324 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   873 LLVPLTGWLPAPLPSQIRTMTVSGTGCIRAVWLAPSKQHLILATS--SGDVQQWHIMSNSLDH-- 933
            |:||:..|.|.           :.|.|:.:|:|  |:...||||.  .|.:..|.:..::|..  
Mosquito     6 LVVPVVLWGPN-----------TPTHCVSSVFL--SRDQKILATGCYDGQICLWQVDPDTLQMTP 57

  Fly   934 --IFKGHTAAVTCLLVAPQSDSELLLTGSEDATVLVWHVGLRERRAHIKNAHTAPITGVAAGANN 996
              :..||||.|.||                             .||.|..             :|
Mosquito    58 RCLLVGHTAPVLCL-----------------------------TRASIIQ-------------DN 80

  Fly   997 TLIISSSEDASIAITDLASGKLRHRI----THHRGPVSGIVVAGACDV-LISGGLDRTICVWDLD 1056
            ..::||||:..:...||..||....|    .|..  :....:|...|: |...|....|.|  :|
Mosquito    81 NFLVSSSENGEMCTWDLVDGKCTESIKMPQVHTN--IQAYHMANCDDIRLFCNGYYAEIMV--MD 141

  Fly  1057 NFTLLNTMQMTSAVLRIDISWNSVFLL----ALCEDNALYVRTLATGKELHTLKGHKSK------ 1111
            .|:|.....::|   :::..|.|...:    ...:|..|.:.|..|.| :.||.|:::|      
Mosquito   142 PFSLEVLFCLSS---KVNPDWISALHVLRPSKRKDDVVLAITTTGTVK-VWTLLGNENKYSEPIY 202

  Fly  1112 ---------IRSISIG--KDSQRCV------------------------------VGCD---DTR 1132
                     :.:|::.  ..:||.|                              :|.|   :.|
Mosquito   203 ENESKQIRCLNAITMNCCSQNQRTVLIVCAKYWQIYDAGDFTVLCSVISPSGERWMGGDFLSNDR 267

  Fly  1133 ALIY-DMHAGKLVRSLPPNPGPVTAVHAMDNDDF------------------------------- 1165
            .::: |...|.|.| ||.|..|       ||.||                               
Mosquito   268 VILWSDEGKGYLFR-LPANSIP-------DNKDFHGPSVGKDTPFLYCILSQTGEKPLSCPPTMK 324

  Fly  1166 LVTVG-GNKITFYSFRNE-ELYVNPYS------RHPRRKRSLKRH-AQAQRSPSTTL-------- 1213
            |||.. ..|...|..|.: |.|||.::      ...::.::.|:| |..:.:..|:|        
Mosquito   325 LVTSNRSGKTQKYLLRGDSEGYVNIWAVPDISMEQIKQIQTQKQHPASLESTICTSLLEAWNKMN 389

  Fly  1214 P-PITCFD-LSRDS-------------QQMAIASGRH--------------VHLMRIN------T 1243
            | |:...| |.::|             ||..:..||.              :||:..|      .
Mosquito   390 PLPVGILDQLYQNSEPMIKLTASIYLPQQSRLVVGREDGSIIIVPATQTVMLHLLHGNHQQFSDW 454

  Fly  1244 PEYQCTLEGHTAGVSCLKFAP-------NGEFLATGSEDRLVHIWNLALGEICNSFKGHTAPVVK 1301
            |.:| .|.||:..|:|| ..|       :...|.:|..|..|.:|:|..|.:.:.|..|...:.:
Mosquito   455 PPHQ-ILNGHSGRVNCL-LCPSLAHSRYDKSHLVSGGVDFAVCLWDLYSGSLIHRFCVHAGEITQ 517

  Fly  1302 VVV--------LMDSLRVISTDRDSMLL-------VWMAHSGNLLQTIQGPYKSLSVTNNMRFAV 1351
            ::|        ::..:..:::|....||       |.:| |.:|...|...::.|.     .|.:
Mosquito   518 LLVPPPTCSPRILKCICSVASDHSVTLLSLQERKCVTLA-SRHLFPVISIKWRPLD-----DFLI 576

  Fly  1352 STNGDNTLKIWSLTQEDEKYSVSHSDEI-----------TCFEISAD----------------SV 1389
            ....|.|:.:|.:       ...|.|.:           .|.|.|.:                :|
Mosquito   577 VGCSDGTVYVWQM-------ETGHLDRVLHGILAEEVLNACDENSGETGSSTGSTSEMGLANPAV 634

  Fly  1390 HIISGSRDMSLK-VWQATGGKLSQV--LVGHSDAVTCVAVSVTNKTQVLSGSK------DMNLIL 1445
            |...|.|..::. :..||...:.|:  |..|::......:...:...::.|.:      :.:::.
Mosquito   635 HFFRGLRHRNINAIRHATQRGIHQLQQLHAHNNQHGDFLMKNRSSPLIIQGLRTNPKDAESHILF 699

  Fly  1446 WD---------------------------LLTGEEVHTLAGHLGPVIG-----VKVSADGSTAVS 1478
            :|                           :.||.:.|  |...|..|.     ||..|.....:.
Mosquito   700 FDIEGLIFELHAEEYAAMSPNTLEAEGLLIPTGTDSH--ASDAGKKISDFFGRVKNKAGDMEKIL 762

  Fly  1479 GSDDKTLIVWETKRG---------LALTSLQMHVPFTHFDIS---------------LEVSRVLV 1519
            ...||..|:.:.|.|         ..|.|:..:|..|..|.|               :||:::|:
Mosquito   763 KEKDKHGILAKMKEGAENVQTKVQAKLESVVKNVGETGKDSSDITKKIAPRMEATHVMEVAQLLL 827

  Fly  1520 QLVDSYNL----------------PVICLHNTPAQY----------VKLPTYSG----------- 1547
            .|:.|:.|                |:|     |..:          :.|||:..           
Mosquito   828 SLIHSWGLDPHLDKVCETQLGLLRPMI-----PVSFGVLSKGGYMSLLLPTWQNNIVINSTADEL 887

  Fly  1548 --PSKDVEDLRPQGPKRQMKRLLKKEVSLDTYTWQKKYGHLTSSVMMAQVDERLKRRFSVSASM- 1609
              .:...|..|.:|..:.....|..|:| .|.|    ..||.:.|.|:..        .:|.:| 
Mosquito   888 KTAAMTPEQFRQEGLTKLFTARLHWELS-TTLT----SNHLLAMVAMSNT--------LMSMNMA 939

  Fly  1610 ------EEISKIAETKTGASQANLGPEQAALAQSQHFDQLEALWNKRSPPRRRHNAGLSRQTSLV 1668
                  |...|:....|.|:.:|...::.|..|.|  .|::..|:..|          :....|:
Mosquito   940 TFIPEQERARKLHRQSTRATWSNEEEQEEAFTQQQ--AQIKQGWSLLS----------THHCFLL 992

  Fly  1669 EDRLESSDDDEYQDERAGMLSASYDNIHH---------------LARL--PGLRSLHDAWKTNSL 1716
            .:::::.|.:.::..:..|::..:.  ||               |.|:  .|.:.|.::|     
Mosquito   993 PEKIDALDANNFKRPQVEMMARRWQ--HHCLEIREAAQQLLLGELGRMGKKGRKQLVESW----- 1050

  Fly  1717 RVPSRSARTKFYVSTPP-----PQNSQNSSSLRLDSHVPGQFTDGVVAPDLVRDLLSVPPTVESP 1776
                 :.....|..|.|     |...|:::.....|.. ||       |.|..:       .||.
Mosquito  1051 -----AQYLPMYTHTEPIVQQAPATGQSNAGSPTSSPT-GQ-------PGLEHE-------EESE 1095

  Fly  1777 QRISLRQLLHWPSLKSRIWRRQRNC------------QSLQPNIRLNPPERLRPTPIIVVENYDV 1829
            :.   .:::..||..:.:.|:|...            |.:.........|..|.:.  |||.:.:
Mosquito  1096 EE---EEVVRKPSSLAELKRKQTTAVVLLGVIGAEFGQDISATDGKRSNENRRKSS--VVEGFGI 1155

  Fly  1830 ------RRVQQLRTDLILHPQTSR 1847
                  |......|.|:|.|.|.:
Mosquito  1156 GNNNLARSTSMALTHLLLAPATQK 1179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30116NP_725799.1 WD40 <897..1057 CDD:441893 39/170 (23%)
WD40 repeat 901..937 CDD:293791 10/41 (24%)
WD40 repeat 942..982 CDD:293791 6/39 (15%)
WD40 repeat 988..1024 CDD:293791 10/39 (26%)
WD40 991..1491 CDD:441893 138/732 (19%)
WD40 repeat 1029..1064 CDD:293791 9/35 (26%)
WD40 repeat 1071..1106 CDD:293791 8/38 (21%)
WD40 repeat 1112..1147 CDD:293791 11/70 (16%)
WD40 repeat 1216..1252 CDD:293791 13/69 (19%)
WD40 repeat 1258..1294 CDD:293791 11/42 (26%)
WD40 repeat 1299..1335 CDD:293791 8/50 (16%)
WD40 repeat 1340..1374 CDD:293791 5/33 (15%)
WD40 repeat 1379..1415 CDD:293791 10/65 (15%)
WD40 repeat 1421..1458 CDD:293791 5/69 (7%)
WD40 repeat 1464..1488 CDD:293791 7/28 (25%)
Rbcn-3BXP_061518785.1 None

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