DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rswl and Trmt10a

DIOPT Version :9

Sequence 1:NP_611335.1 Gene:rswl / 37124 FlyBaseID:FBgn0034351 Length:446 Species:Drosophila melanogaster
Sequence 2:NP_001335125.1 Gene:Trmt10a / 108943 MGIID:1920421 Length:330 Species:Mus musculus


Alignment Length:356 Identity:87/356 - (24%)
Similarity:154/356 - (43%) Gaps:76/356 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 VNPFSQPAPALSNDT-------ISENKEERDKRLKVLQLEADIAHQEGRRVPSLEFFKDHHWEHV 103
            :|..|:..||....|       .|:.:|||.:.    :::|.......|::..|  .|...||. 
Mouse     1 MNMSSEMLPASIESTNVEEKLGTSDGEEERQEP----RVDAGAEPISKRQLKKL--MKQKQWEE- 58

  Fly   104 LTLPTKSARIKYFGYLWQIEMKKEADQRKKAERAKEAERRVAEMRKEREENTHIIYGLGHTSLFL 168
                             |.|.:||  :||:..:.|:.|||..|...:..:...:...:..:||  
Mouse    59 -----------------QREQRKE--KRKEKRKRKKLERRQLESNSDGNDRKRVRRDVARSSL-- 102

  Fly   169 RIYDTTINHWQNNRLTRAMQFAPKMVLDCSYDEHMNNREATYAAKQLMMCFAENRMNDEP--FDL 231
                                   ::|:|||:|:.|..::.....||:..|:||||....|  |.|
Mouse   103 -----------------------RLVIDCSFDDLMVLKDIKKLHKQIQRCYAENRRASHPVQFYL 144

  Fly   232 HYCNTQMDSRCMQSLQRYIPTMHNPEFPINLHSKCFTELFPKQNLVYLT---PHCREDLVTYNPD 293
            .....|:.....::.|.::...     .|::.|:.::||..|::|||||   |:..:||   :..
Mouse   145 TSHGGQLKKNMDENDQGWVNWK-----DIHIKSEHYSELIKKEDLVYLTSDSPNVLKDL---DES 201

  Fly   294 DIYIVGAMVDTMNNEPLSLAKAKRLGLRMARLPLDRYLQWGSGSGKSLTLNQMINIMLDLKKTGD 358
            ..|::|.:||..:::.|:..:|...|:..|:|||..:::  ..|.|.|.:|.:..|:|:..:|.|
Mouse   202 KAYVIGGLVDHNHHKGLTFKQATSYGIEHAQLPLADFVK--MNSRKVLAVNHVFEIILEFLETRD 264

  Fly   359 WDTALKHV-PRRK--VVQNEFQPRREKDHWS 386
            |..|...: |:||  |..::......:||.|
Mouse   265 WQEAFFTILPQRKGAVPAHKACESSPQDHQS 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rswlNP_611335.1 tRNA_m1G_MT 201..370 CDD:294285 48/174 (28%)
Trmt10aNP_001335125.1 Trm10euk_A 102..277 CDD:349974 54/209 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2967
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1545
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.