DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp19 and CG5114

DIOPT Version :10

Sequence 1:NP_523783.1 Gene:Prp19 / 37123 FlyBaseID:FBgn0261119 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_001246760.1 Gene:CG5114 / 39624 FlyBaseID:FBgn0036460 Length:445 Species:Drosophila melanogaster


Alignment Length:446 Identity:88/446 - (19%)
Similarity:140/446 - (31%) Gaps:166/446 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 DQVKNFLTVASHPGLHSASVPGILALDINSADHSKI----------LTGGNDKNATVFN--KDTE 255
            |:::..:.:...|            ||.:..|..::          :.||:|.......  :|.|
  Fly    17 DELQEIIELEEQP------------LDEDDDDLEEVTLEQLEARLAMAGGDDDEEEDEEELRDRE 69

  Fly   256 QMVAI-------LKGHTKKITKVIYHPNEDTVITGSPDMNIRIWHVPTSQTQLLLRCHEGPVTGL 313
            ::.||       .|.||..:.....|||.:..:|||.|....:|...|......:..|:..||..
  Fly    70 RIAAITDEATVTFKKHTAPVFACSLHPNYNWAVTGSEDDRAFVWETSTGDVLYEITEHKDTVTET 134

  Fly   314 SLHPTGDYLLSTS----------SDKH---------WAF--SDI------RTGRLLTKVIDTAEV 351
            .....|.||.:..          |:||         |.:  ||:      |...:|....|:.||
  Fly   135 HFSHDGVYLATGDLAGDLFVFKVSEKHDERPILTKIWEYSMSDMSWLFWHRAAHILLAGSDSGEV 199

  Fly   352 GL------------------TTAQFHPDGLIFGTGTVDSQVKIWDLK--------EQSNVANFPG 390
            .:                  .:.:...||....|..|:..||:||||        .:|:...|..
  Fly   200 FVFRIPSGECKILPGQSSRCESGELSGDGKKLFTAYVNGSVKLWDLKSCQVLIDVNESHPMGFGE 264

  Fly   391 HTGPISAISFSENGYYLATAADDACVKLWDLRKLKNF-----------------KTIQLDDGYEV 438
            .|..:.|.. .|:.:|:...|...|.....:|...:|                 .|||.:.|.|.
  Fly   265 ITHAVVACE-RESPFYVCAEASGECSSGKGIRYNTSFHNKTIRKMLFCTNNGPVSTIQSEHGIEC 328

  Fly   439 KDLCFDQSGTYLAIAGSDVRVYLCKQ-------WQ--------------------ELKVFNDHTA 476
              |.|       |.:.:|::::.|..       |.                    .:|..||||.
  Fly   329 --LAF-------APSSADLKLFACGSLDGRISIWDYAKSALRTICENPVPNDAVIRIKWLNDHTI 384

  Fly   477 LA-------------TGV-RFGKHAQY--------------LASTSMDRTLKLYAI 504
            ||             ||: :|.....|              |.:.|.|.|.|::.:
  Fly   385 LAATSQGNLNAFDARTGILKFTLTGHYYHIYEFVYKPQENLLLTVSEDNTAKIFKV 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp19NP_523783.1 RING-Ubox_PRP19 3..56 CDD:438318
Prp19 69..133 CDD:400774
WD40 210..503 CDD:238121 87/436 (20%)
WD40 repeat 269..305 CDD:293791 9/35 (26%)
WD40 repeat 310..345 CDD:293791 13/61 (21%)
WD40 repeat 354..389 CDD:293791 11/42 (26%)
WD40 repeat 395..431 CDD:293791 8/52 (15%)
WD40 repeat 438..484 CDD:293791 15/86 (17%)
CG5114NP_001246760.1 WD40 79..439 CDD:475233 76/369 (21%)
WD40 repeat 89..126 CDD:293791 9/36 (25%)
WD40 repeat 132..170 CDD:293791 7/37 (19%)
WD40 repeat 175..213 CDD:293791 7/37 (19%)
WD40 repeat 220..299 CDD:293791 19/79 (24%)
WD40 repeat 266..321 CDD:293791 9/55 (16%)
WD40 repeat 326..365 CDD:293791 7/47 (15%)
WD40 repeat 373..408 CDD:293791 10/34 (29%)
WD40 repeat 414..438 CDD:293791 5/23 (22%)
Blue background indicates that the domain is not in the aligned region.

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