DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp19 and prpf19

DIOPT Version :9

Sequence 1:NP_523783.1 Gene:Prp19 / 37123 FlyBaseID:FBgn0261119 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_958875.1 Gene:prpf19 / 321544 ZFINID:ZDB-GENE-030131-263 Length:505 Species:Danio rerio


Alignment Length:507 Identity:343/507 - (67%)
Similarity:407/507 - (80%) Gaps:5/507 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MALVCALTNEVPETPVVSPHSGAVFEKRVIEKYLLENGCDPISGKELKPEELIEIKTPAVVKPKP 65
            |:||||::|||||.|.|||.|..|||:|:||||:.|||.|||:|:.|..|:||:||....::||.
Zfish     1 MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPINGQPLSEEQLIDIKVSHPIRPKA 65

  Fly    66 PSATSIPATLKTMQDEWDALMIHSFTQRQQLQTTRQELSHALYQHDAACRVIARLNKEVAAAREA 130
            ||||||||.||::||||||:|:||||.||||||||||||||||||||||||||||.|||.|||||
Zfish    66 PSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREA 130

  Fly   131 LATLKPQAGIANAPTAIP--QPALASEAGGAAAHPMEQAGMSAEVIQKLQDKATVLTQERKKRGR 193
            |||||||||:. ||.|.|  ||| |..|||.|....||.||:.|:||||||||||||.||||||:
Zfish   131 LATLKPQAGLV-APQAAPASQPA-AVGAGGEAMEVSEQVGMTPEIIQKLQDKATVLTTERKKRGK 193

  Fly   194 TVPEDLVTTDQVKNFLTVASHPGLHSASVPGILALDINSADHSKILTGGNDKNATVFNKDTEQMV 258
            ||||:||..:.:..:..|.||.|||||||||||:||:...|.:|:||||.|||..||::..||:|
Zfish   194 TVPEELVRAEDLSKYRQVGSHAGLHSASVPGILSLDLCPTDTNKVLTGGADKNVVVFDRREEQIV 258

  Fly   259 AILKGHTKKITKVIYHPNEDTVITGSPDMNIRIWHVPTSQTQLLLRCHEGPVTGLSLHPTGDYLL 323
            |.|||||||::.|||||.:..|.:.|.|..||:|.|.......::|.||..|||||||.||||||
Zfish   259 ATLKGHTKKVSSVIYHPAQAVVFSASSDSTIRVWSVTGGNCVQVVRAHESAVTGLSLHATGDYLL 323

  Fly   324 STSSDKHWAFSDIRTGRLLTKVID-TAEVGLTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVAN 387
            |:|.|::||||||:|||:||||.| ||...||.||||||||||||||.|||:|||||||::||||
Zfish   324 SSSEDQYWAFSDIQTGRVLTKVTDETAGCALTCAQFHPDGLIFGTGTGDSQIKIWDLKERTNVAN 388

  Fly   388 FPGHTGPISAISFSENGYYLATAADDACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYLAI 452
            ||||:||::||:||||||||||.|.|:.:||||||||||||||.||:.||||.|.|||||||||:
Zfish   389 FPGHSGPVTAIAFSENGYYLATGAQDSSLKLWDLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAV 453

  Fly   453 AGSDVRVYLCKQWQELKVFNDHTALATGVRFGKHAQYLASTSMDRTLKLYAI 504
            .|||:|||:||||.|:..|:||:.|.|||.||:|||:||||.|||:||.|::
Zfish   454 GGSDIRVYICKQWSEVLNFSDHSGLVTGVAFGEHAQFLASTGMDRSLKFYSL 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp19NP_523783.1 Ubox 2..68 CDD:128780 38/65 (58%)
Prp19 69..132 CDD:285771 54/62 (87%)
WD40 210..503 CDD:238121 197/293 (67%)
WD40 <225..505 CDD:225201 186/281 (66%)
WD40 repeat 269..305 CDD:293791 12/35 (34%)
WD40 repeat 310..345 CDD:293791 27/34 (79%)
WD40 repeat 354..389 CDD:293791 29/34 (85%)
WD40 repeat 395..431 CDD:293791 27/35 (77%)
WD40 repeat 438..484 CDD:293791 30/45 (67%)
prpf19NP_958875.1 Ubox 2..60 CDD:128780 35/57 (61%)
Prp19 69..132 CDD:285771 54/62 (87%)
WD40 224..504 CDD:238121 186/279 (67%)
WD40 <225..505 CDD:225201 186/279 (67%)
WD40 repeat 225..263 CDD:293791 20/37 (54%)
WD40 repeat 269..305 CDD:293791 12/35 (34%)
WD40 repeat 310..345 CDD:293791 27/34 (79%)
WD40 repeat 355..390 CDD:293791 29/34 (85%)
WD40 repeat 396..434 CDD:293791 28/37 (76%)
WD40 repeat 439..465 CDD:293791 19/25 (76%)
WD40 repeat 479..503 CDD:293791 17/23 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595939
Domainoid 1 1.000 136 1.000 Domainoid score I4886
eggNOG 1 0.900 - - E1_KOG0289
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6421
Inparanoid 1 1.050 687 1.000 Inparanoid score I675
OMA 1 1.010 - - QHG54686
OrthoDB 1 1.010 - - D1049599at2759
OrthoFinder 1 1.000 - - FOG0003405
OrthoInspector 1 1.000 - - oto41489
orthoMCL 1 0.900 - - OOG6_102145
Panther 1 1.100 - - LDO PTHR43995
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R276
SonicParanoid 1 1.000 - - X2757
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

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