DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prp19 and prp19

DIOPT Version :9

Sequence 1:NP_523783.1 Gene:Prp19 / 37123 FlyBaseID:FBgn0261119 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_594874.1 Gene:prp19 / 2542256 PomBaseID:SPAC29A4.08c Length:488 Species:Schizosaccharomyces pombe


Alignment Length:530 Identity:154/530 - (29%)
Similarity:250/530 - (47%) Gaps:74/530 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LVCALTNEVPETPVVSPHSGAVFEKRVIEKYLLENGCDPISGKELKPEELIEIKTPAVVKPKPPS 67
            :.|:::.|.|:.||:|..||.|:|||:||:.:.|...||::.:|...|:|:.:|.|..|:|:|||
pombe     1 MFCSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVPDFVRPRPPS 65

  Fly    68 ATSIPATLKTMQDEWDALMIHSFTQRQQLQTTRQELSHALYQHDAACRVIARLNKEVAAAREALA 132
            |||:||.|...|:|||::.:..|..|:.|..|:||||.|||..|||.|||:||.||...||||||
pombe    66 ATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLTKERDEAREALA 130

  Fly   133 TLKPQAGIANAPTAIPQPALASEAGGAAAHPMEQAGMSAEVIQKLQDKATVLTQERKKRGRTVPE 197
            ......|..::.|...|.....|:....     :..:.:.|.:..|:.::     ::||.:..|:
pombe   131 KFSDNIGTVSSKTIEVQEVEMGESDDQL-----KTSLRSTVEKTFQELSS-----KRKRTKLQPK 185

  Fly   198 DLVTTDQVKNFL---------------TVASHPGLHSASV------PGILALDINSADHSKILTG 241
             ..|.|.|...|               |.:..|...::|.      ..:|.|||.|....||..|
pombe   186 -WATDDAVSQLLQATPSTILENLETESTTSFFPSPENSSFVLCLHKDELLCLDIQSNSTLKIFEG 249

  Fly   242 GNDKNATVFNKDTEQMVAILKGHTKKITKVIYHPNEDTVI--TGSPDMNIRIWHVPTSQTQLLLR 304
                :|......|...:|:.   |.....:...|...:.:  .|.|..:|.|             
pombe   250 ----SALACCWLTSSKIAVA---TADAISIFEFPVSSSGLQSVGEPTSSIPI------------- 294

  Fly   305 CHEGPVTGLSLHPTGDYLLSTSSDKHWAFSDIRTGRLLTKVID-TAEVGLTTAQFHPDGLIFGTG 368
              :..|..|..||:|:|||:.|::|.:.||      |.::|.: |....:|:...||||.:|..|
pombe   295 --DEKVNFLQAHPSGEYLLAASNEKCYIFS------LKSQVYNITVAQHITSLAVHPDGNLFVAG 351

  Fly   369 TVDSQVKIWDLKEQSNVANFPGHTGPISAISFSENGYYL-ATAADDACVKLWDLRKLKNFKTIQL 432
            ..:.:::.::....:.:..|..|:.|:..:.|.||||:| .|..||:.:.:|||||.:..:.|.|
pombe   352 LENGELRFFETSSGNELTKFGPHSSPVKTLQFGENGYWLVVTTNDDSDIFIWDLRKSELVQKIPL 416

  Fly   433 DDGYEVKDLCFDQSGTYLAIAGSD---VRVYL--CKQWQELKVFNDH-TALATGVRFGKHAQYLA 491
            ..  :|..:..|.:...|..:..:   |.:|:  .|.|:.:.  ..| ::::..|...:..|.|.
pombe   417 QT--KVAAVSLDITSQLLVSSDGETLYVHIYVKSSKSWRCMS--QTHVSSISNLVWLNELHQLLF 477

  Fly   492 STSMDRTLKL 501
            |||....|:|
pombe   478 STSNGAILRL 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp19NP_523783.1 Ubox 2..68 CDD:128780 26/64 (41%)
Prp19 69..132 CDD:285771 34/62 (55%)
WD40 210..503 CDD:238121 77/308 (25%)
WD40 <225..505 CDD:225201 74/287 (26%)
WD40 repeat 269..305 CDD:293791 5/37 (14%)
WD40 repeat 310..345 CDD:293791 13/34 (38%)
WD40 repeat 354..389 CDD:293791 7/34 (21%)
WD40 repeat 395..431 CDD:293791 14/36 (39%)
WD40 repeat 438..484 CDD:293791 9/51 (18%)
prp19NP_594874.1 Ubox 1..66 CDD:128780 26/64 (41%)
Prp19 67..130 CDD:285771 34/62 (55%)
WD40 136..487 CDD:225201 89/393 (23%)
WD40 repeat 252..293 CDD:293791 6/43 (14%)
WD40 297..>484 CDD:295369 55/196 (28%)
WD40 repeat 298..329 CDD:293791 14/36 (39%)
WD40 repeat 337..371 CDD:293791 7/33 (21%)
WD40 repeat 378..419 CDD:293791 16/42 (38%)
WD40 repeat 427..459 CDD:293791 5/33 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 71 1.000 Domainoid score I2629
eggNOG 1 0.900 - - E1_KOG0289
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 190 1.000 Inparanoid score I1057
OMA 1 1.010 - - QHG54686
OrthoFinder 1 1.000 - - FOG0003405
OrthoInspector 1 1.000 - - oto101303
orthoMCL 1 0.900 - - OOG6_102145
Panther 1 1.100 - - LDO PTHR43995
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R276
SonicParanoid 1 1.000 - - X2757
TreeFam 1 0.960 - -
1312.860

Return to query results.
Submit another query.