DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp19 and Prpf19

DIOPT Version :10

Sequence 1:NP_523783.1 Gene:Prp19 / 37123 FlyBaseID:FBgn0261119 Length:505 Species:Drosophila melanogaster
Sequence 2:XP_006231076.1 Gene:Prpf19 / 246216 RGDID:708496 Length:523 Species:Rattus norvegicus


Alignment Length:529 Identity:336/529 - (63%)
Similarity:415/529 - (78%) Gaps:31/529 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MALVCALTNEVPETPVVSPHSGAVFEKRVIEKYLLENGCDPISGKELKPEELIEIKTPAVVKPKP 65
            |:|:|:::|||||.|.|||.|..|:|:|:||||:.|||.|||:.:.|..|:||:||....::|||
  Rat     1 MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKP 65

  Fly    66 PSATSIPATLKTMQDEW-------------------DALMIHSFTQRQQLQTTRQELSHALYQHD 111
            ||||||||.||.:||||                   ||:|:||||.|||||||||||||||||||
  Rat    66 PSATSIPAILKALQDEWGWPNSPALPQSSQWPTLSQDAVMLHSFTLRQQLQTTRQELSHALYQHD 130

  Fly   112 AACRVIARLNKEVAAAREALATLKPQAGIANAPTAIP--QPALASEAGGAAAHPM---EQAGMSA 171
            |||||||||.|||.||||||||||||||:. .|.|:|  ||::.     .|..||   |..||:.
  Rat   131 AACRVIARLTKEVTAAREALATLKPQAGLI-VPQAVPSSQPSVV-----GAGEPMDLGELVGMTP 189

  Fly   172 EVIQKLQDKATVLTQERKKRGRTVPEDLVTTDQVKNFLTVASHPGLHSASVPGILALDINSADHS 236
            |:||||||||||||.||||||:||||:||..:::..:..||||.||||||:|||||||:..:|.:
  Rat   190 EIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTN 254

  Fly   237 KILTGGNDKNATVFNKDTEQMVAILKGHTKKITKVIYHPNEDTVITGSPDMNIRIWHVPTSQTQL 301
            ||||||.|||..||:|.|||::|.|||||||:|.|::||:::.|.:.|||..||||.||.:....
  Rat   255 KILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQ 319

  Fly   302 LLRCHEGPVTGLSLHPTGDYLLSTSSDKHWAFSDIRTGRLLTKVID-TAEVGLTTAQFHPDGLIF 365
            ::|.||..|||||||.|||||||:|.|::||||||:|||:||||.| |:...||.||||||||||
  Rat   320 VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIF 384

  Fly   366 GTGTVDSQVKIWDLKEQSNVANFPGHTGPISAISFSENGYYLATAADDACVKLWDLRKLKNFKTI 430
            ||||:|||:|||||||::||||||||:|||::|:||||||||||||||:.||||||||||||||:
  Rat   385 GTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTL 449

  Fly   431 QLDDGYEVKDLCFDQSGTYLAIAGSDVRVYLCKQWQELKVFNDHTALATGVRFGKHAQYLASTSM 495
            |||:.:|||.|.|||||||||:.|:||::|:||||.|:..|.:|:.|.|||.||.||:::|||.|
  Rat   450 QLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGM 514

  Fly   496 DRTLKLYAI 504
            ||:||.|::
  Rat   515 DRSLKFYSL 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp19NP_523783.1 RING-Ubox_PRP19 3..56 CDD:438318 29/52 (56%)
Prp19 69..133 CDD:400774 55/82 (67%)
WD40 210..503 CDD:238121 198/293 (68%)
WD40 repeat 269..305 CDD:293791 14/35 (40%)
WD40 repeat 310..345 CDD:293791 27/34 (79%)
WD40 repeat 354..389 CDD:293791 29/34 (85%)
WD40 repeat 395..431 CDD:293791 30/35 (86%)
WD40 repeat 438..484 CDD:293791 27/45 (60%)
Prpf19XP_006231076.1 RING-Ubox_PRP19 3..56 CDD:438318 29/52 (56%)
Prp19 69..152 CDD:400774 55/82 (67%)
WD40 repeat 243..281 CDD:293791 23/37 (62%)
WD40 <252..523 CDD:441893 182/270 (67%)
WD40 repeat 287..323 CDD:293791 14/35 (40%)
WD40 repeat 328..363 CDD:293791 27/34 (79%)
WD40 repeat 373..408 CDD:293791 29/34 (85%)
WD40 repeat 414..450 CDD:293791 30/35 (86%)
WD40 repeat 457..483 CDD:293791 17/25 (68%)
WD40 repeat 495..521 CDD:293791 16/25 (64%)

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