DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp19 and prp-19

DIOPT Version :9

Sequence 1:NP_523783.1 Gene:Prp19 / 37123 FlyBaseID:FBgn0261119 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_001380015.1 Gene:prp-19 / 24104882 WormBaseID:WBGene00020423 Length:492 Species:Caenorhabditis elegans


Alignment Length:507 Identity:237/507 - (46%)
Similarity:338/507 - (66%) Gaps:20/507 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MALVCALTNEVPETPVVSPHSGAVFEKRVIEKYLLENGCDPISGKELKPEELIEIKTPAV-VKPK 64
            |:.||.::.|:.|.||||..||.:|::|:|.|::.|||.||||..||..::|:.:|:... ..|:
 Worm     1 MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGTGSAPR 65

  Fly    65 PPSATSIPATLKTMQDEWDALMIHSFTQRQQLQTTRQELSHALYQHDAACRVIARLNKEVAAARE 129
            ..|.||||:.||.:|||||.:|::||:.|||||..||||||:|||||||||||:||:||:.||||
 Worm    66 NVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSKELTAARE 130

  Fly   130 ALATLKPQAGI-ANAPTAIPQPALASEAGGAAAHPMEQAGMSAEVIQKLQDKATVLTQERKKRGR 193
            ||:||||.... .:...:|.:    ||         :|.|:|..::.||::|:..||.|||:||:
 Worm   131 ALSTLKPHTSAKVDDDVSIDE----SE---------DQQGLSEAILAKLEEKSKSLTAERKQRGK 182

  Fly   194 TVPEDLVTTDQVKNFLTVASHPGLHSASVPGILALDINSADHSKILTGGNDKNATVFNKDTEQMV 258
            .:||.|..|:::......|||.|:||...|||.||||..   :..||||.||...:::.:.||::
 Worm   183 NLPEGLAKTEELAELKQTASHTGIHSTGTPGITALDIKG---NLSLTGGIDKTVVLYDYEKEQVM 244

  Fly   259 AILKGHTKKITKVIYHPNEDTVITGSPDMNIRIWHVPTSQTQLLLRCHEGPVTGLSLHPTGDYLL 323
            ...|||.|||..|:.||:..|.|:.|.|.:||:|....|.::.::..|:.|||.:||:.:|||:|
 Worm   245 QTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISLNASGDYIL 309

  Fly   324 STSSDKHWAFSDIRTGRLLTKVI--DTAEVGLTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVA 386
            |.|.|.:|||||||:|:.|.||.  ..:::.:.:.:|||||||||||..|:.|||||||.|:..|
 Worm   310 SASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAA 374

  Fly   387 NFPGHTGPISAISFSENGYYLATAADDACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYLA 451
            .|||||..:.:|:||||||||||.::|..|||||||||||.||...::...:..|.||.:||:|.
 Worm   375 AFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTFANEEKQPINSLSFDMTGTFLG 439

  Fly   452 IAGSDVRVYLCKQWQELKVFNDHTALATGVRFGKHAQYLASTSMDRTLKLYA 503
            |.|..|:|...|.|.|:...:||:...||||||::|:.|.:.|:|::|::::
 Worm   440 IGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFS 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp19NP_523783.1 Ubox 2..68 CDD:128780 26/66 (39%)
Prp19 69..132 CDD:285771 45/62 (73%)
WD40 210..503 CDD:238121 139/294 (47%)
WD40 <225..505 CDD:225201 131/281 (47%)
WD40 repeat 269..305 CDD:293791 11/35 (31%)
WD40 repeat 310..345 CDD:293791 20/34 (59%)
WD40 repeat 354..389 CDD:293791 21/34 (62%)
WD40 repeat 395..431 CDD:293791 25/35 (71%)
WD40 repeat 438..484 CDD:293791 19/45 (42%)
prp-19NP_001380015.1 RING-Ubox_PRP19 4..56 CDD:319570 24/51 (47%)
Prp19 70..134 CDD:400774 46/63 (73%)
SMC_prok_B <74..>201 CDD:274008 66/139 (47%)
WD40 213..491 CDD:238121 132/280 (47%)
WD40 repeat 255..291 CDD:293791 11/35 (31%)
WD40 repeat 296..335 CDD:293791 22/38 (58%)
WD40 repeat 342..377 CDD:293791 21/34 (62%)
WD40 repeat 383..418 CDD:293791 24/34 (71%)
WD40 repeat 456..490 CDD:293791 13/33 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167256
Domainoid 1 1.000 101 1.000 Domainoid score I4377
eggNOG 1 0.900 - - E1_KOG0289
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 467 1.000 Inparanoid score I846
Isobase 1 0.950 - 0 Normalized mean entropy S1589
OMA 1 1.010 - - QHG54686
OrthoDB 1 1.010 - - D1049599at2759
OrthoFinder 1 1.000 - - FOG0003405
OrthoInspector 1 1.000 - - oto20499
orthoMCL 1 0.900 - - OOG6_102145
Panther 1 1.100 - - LDO PTHR43995
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R276
SonicParanoid 1 1.000 - - X2757
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.790

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