DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slim and krcp

DIOPT Version :9

Sequence 1:NP_523782.1 Gene:slim / 37121 FlyBaseID:FBgn0261477 Length:609 Species:Drosophila melanogaster
Sequence 2:XP_005172311.1 Gene:krcp / 323406 ZFINID:ZDB-GENE-030131-2126 Length:538 Species:Danio rerio


Alignment Length:556 Identity:121/556 - (21%)
Similarity:185/556 - (33%) Gaps:185/556 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 PQQDNGEVVDRFNAIQAAVELMDAASDLDEEEEEEDDDVDVDV-----DYGDTDSESEFEEMYSD 138
            |||    ::.|....|::||:...              |.:.|     |:|..||.|  .|: ||
Zfish    16 PQQ----ILSRREGWQSSVEIQSG--------------VQLMVLFTRGDWGTRDSVS--VEL-SD 59

  Fly   139 E------------------WTSSSDELDEGTELSKSVLNVFLSSDKQQ--------SQM------ 171
            |                  |.:..|    |...|.:.|.|.|:.|...        |||      
Zfish    60 ERNTPITMAKLTPFNKCLSWEAGED----GVWSSGATLTVKLNGDTNDLLDPVQTFSQMECTPEC 120

  Fly   172 AGQIPMYAFQPLRLVKCQYRDKHIPG----GFPLARSGHRIIASNSHL---YSLGGYNPR----- 224
            ...:|       .|.:|..:.|...|    |....|....|..:.|..   :..|..|||     
Zfish   121 TPTVP-------ALRECAGKRKRSQGEEAEGISEGRGKENICPNASEKATPHRRGKSNPRGGQTR 178

  Fly   225 --------SAMSASRHGRCLLFQELWSYNFATRTWRLELNAGNAAN--MPVELASNALTIHNNVL 279
                    :|.|||::.:....|...|    ::|.:|:..:|....  .|:: ...|:.|     
Zfish   179 LFPQKEEQTATSASQNHKTKSKQTKTS----SQTAQLDKPSGRWGQTLCPID-PQTAILI----- 233

  Fly   280 ISHGGTGY-------PFGVSCSNDC--YVYRTASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHF 335
               ||.|.       |....|:.|.  ....|.:.|.||.. |:.     .||.|.|    ....
Zfish   234 ---GGQGARMQFCKDPIWKLCTEDLSWVPAETLAEGPTPEA-RIG-----HTATYDP----ESKR 285

  Fly   336 LYTIGGTTGFDYTCDVYRLDLRTGIWENVYISRPEMRDDPEGR-----YRHEVVYDGKHIFVLGG 395
            ::..||:....:..||:.||.::..|..|         :.:|:     |....::.|: :||.||
Zfish   286 IFVFGGSKHKKWFNDVHILDTQSWRWTLV---------EAQGKVPPLAYHSCSMFRGE-LFVFGG 340

  Fly   396 ----------GTSHSVYDLQRIPAYNLEANCWDYFETYPDQRAADADDGNRGYPKPRKCFS-CVQ 449
                      |.|.|:|      .:|.|...| |......::           |.||...| ||.
Zfish   341 VFPRPHPEPDGCSDSIY------IFNPEMAIW-YQPIVNGEK-----------PAPRSGHSACVM 387

  Fly   450 HQSSTGDIEAFITGGLQGDFSTYFSDIWKLNLRTKHWYRIETA-ILPRPLYFHSAAHSDNGCMYV 513
            .    |.|  |:.||  .|....|:|::.|:|....:..::|: ..|.|..:|..|........:
Zfish   388 Q----GRI--FVFGG--WDTPVCFNDMFMLDLGLMEFSPVKTSGTAPSPRSWHGCAVLSESSFLI 444

  Fly   514 FGGIEYIDKEMRRRNDLYKMWMTVPKLSEMCWDAIT 549
            .||       ....|.|...::.....|  ||.::|
Zfish   445 HGG-------YNGNNALSDAFIFNTDTS--CWSSLT 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slimNP_523782.1 KELCH repeat 203..263 CDD:276965 16/77 (21%)
KELCH repeat 267..321 CDD:276965 13/62 (21%)
KELCH repeat 324..364 CDD:276965 9/39 (23%)
Kelch_1 325..372 CDD:279660 10/46 (22%)
Kelch_4 441..492 CDD:290154 15/51 (29%)
KELCH repeat 442..495 CDD:276965 15/54 (28%)
krcpXP_005172311.1 Kelch_3 228..280 CDD:290151 15/65 (23%)
Kelch_4 271..316 CDD:290154 13/63 (21%)
KELCH repeat 272..323 CDD:276965 14/68 (21%)
KELCH repeat 324..370 CDD:276965 14/53 (26%)
Kelch_3 332..386 CDD:290151 17/72 (24%)
Kelch_1 378..>411 CDD:279660 14/40 (35%)
KELCH repeat 379..426 CDD:276965 15/54 (28%)
KELCH repeat 429..471 CDD:276965 9/50 (18%)
Kelch 446..488 CDD:128874 8/35 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0379
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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