DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slim and klhdc2

DIOPT Version :10

Sequence 1:NP_523782.1 Gene:slim / 37121 FlyBaseID:FBgn0261477 Length:609 Species:Drosophila melanogaster
Sequence 2:NP_001096337.1 Gene:klhdc2 / 100124923 XenbaseID:XB-GENE-1006177 Length:159 Species:Xenopus tropicalis


Alignment Length:265 Identity:45/265 - (16%)
Similarity:64/265 - (24%) Gaps:140/265 - (52%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 SDLDEEEEEEDDDVDVDVDYGDTDSESEFEEMYSDEWTSSSDELDEGTELSKSVLNVFLSSDKQQ 168
            :|.|.|||||:||.|                          |.:||                   
 Frog    10 ADADGEEEEEEDDDD--------------------------DLVDE------------------- 29

  Fly   169 SQMAGQIPMYAFQPLRLVKCQYRDKHIPGGFPLARSGHRIIASNSHLYSLGGYNPRSAMSASRHG 233
                                         ..|..||||..:.....::..|||  ::|.....:.
 Frog    30 -----------------------------SIPAERSGHVAVTDGQSIFVWGGY--KNAPVRGFYD 63

  Fly   234 RCLLFQELWSYNFATRTWRLELNAGNAANMPVELASNALTIHNNVLISHGGTGYPFGVSCSNDCY 298
            ..|...|:|.|:....:|:                                              
 Frog    64 FYLPRDEIWIYDMENGSWQ---------------------------------------------- 82

  Fly   299 VYRTASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHFLYTIGGTTGFDYTCDVYRLDL--RTG-- 359
                          |::.||::|.:..|.........||..||......|...|.|:|  |.|  
 Frog    83 --------------RVKTKGEIPLSMSGSCAACVDKVLYLFGGHHAHGNTNMFYMLNLNPRDGDL 133

  Fly   360 IWENV 364
            .||.|
 Frog   134 FWEKV 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slimNP_523782.1 NanM 197..516 CDD:442289 32/172 (19%)
KELCH repeat 203..263 CDD:276965 13/59 (22%)
KELCH repeat 267..321 CDD:276965 3/53 (6%)
KELCH repeat 324..364 CDD:276965 13/43 (30%)
KELCH repeat 442..495 CDD:276965
klhdc2NP_001096337.1 NanM <33..>125 CDD:442289 24/153 (16%)
KELCH repeat 35..91 CDD:276965 16/117 (14%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.