DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dp1 and RGD1561230

DIOPT Version :10

Sequence 1:NP_523781.2 Gene:Dp1 / 37116 FlyBaseID:FBgn0027835 Length:1301 Species:Drosophila melanogaster
Sequence 2:NP_001100438.1 Gene:RGD1561230 / 302776 RGDID:1561230 Length:676 Species:Rattus norvegicus


Alignment Length:702 Identity:215/702 - (30%)
Similarity:354/702 - (50%) Gaps:79/702 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   626 TQTKIDLPAEGDTNEVIVITGKKENVLEAKE---RIQKIQNELSDIVTEEVQIPPKYYNSIIGTG 687
            ::..::|.::.|.:..||:. ..||...|:.   .:||...::|::   |..||...|.|:|...
  Rat    26 SKINVNLLSDWDLDNDIVVR-NPENCELAESWFVSMQKGTVKMSEV---EFSIPFSSYKSLISPQ 86

  Fly   688 GKLISSIMEECGGVSIKFPNSDSKSDKVTIRGPKDDVEKAKVQLLELANERQLASFTAEVRAKQQ 752
            ..||..||||||..:|.|.|..|...:|.||||.:::||.|.:.|:|..|.:..:::..|..|.:
  Rat    87 KHLIDKIMEECGTFNIYFSNRKSNLQQVIIRGPIENIEKIKKKFLQLLEEEKAQNYSLAVPVKSK 151

  Fly   753 HHKFLIGKNGASIRKIRDATGARIIFPSNEDTDKEVITIIGKEESVKKAREQLEAIIKECDEVTE 817
            :|:||..|||.::.......|||.|||:.::.:::::|||||||:||:.:::|:.::|:.:.|.|
  Rat   152 YHQFLKNKNGGNLPNTCVKLGARAIFPTLKNKNQDLVTIIGKEEAVKEVQKELDLLLKDLEYVVE 216

  Fly   818 GEVSVDPKHHKHFVAKRGFILHRISEECGGVMISFPRVGINSDKVTIKGAKDCIEAARQRIEEIV 882
            ..:.::.|.|.:|:.:|..::..::|...|::|:|...|..|.:||:||.|.|:|||::.:::|.
  Rat   217 DSILINRKFHHYFIMRRDQLIREMTEVYAGMIINFTYEGKQSIRVTMKGEKACVEAAKKHVQQIF 281

  Fly   883 ADLEAQTTIEVVIPQRHHRTIMGARGFKVQQVTFEFDVQIKFPDRDAT----EPVEGLTNGGSGE 943
            ..|.:..|.:.|:||:.:...||....||||:..:|.||:.|||:..|    .||...|   ..|
  Rat   282 EPLGSHVTTQYVVPQKFYTFFMGPLCSKVQQIARDFKVQLAFPDKGKTTMYVHPVVQET---EKE 343

  Fly   944 NGGENEGQEGEQEVEKEAEQEPVRQCDVIRITGRIEKCEAAKQALLDLIPIEEELSVPFDLHRTI 1008
            ..|:|         .||......|:...|.|:|::|.|:||.:||..|||...|:.||..||..|
  Rat   344 KWGKN---------SKELVFSNERKSKTILISGQMENCKAAMEALEYLIPFTAEVQVPSHLHPYI 399

  Fly  1009 IGPRGANVRQFMSKHDVHVELPPSELKSDVIKVCGTPARVAEAREALVKMIEDYEADRADRELRS 1073
            ||.:|:.:::.||:.|||.::......||:|.:.|..|:|.:|:..|.|.|...:.:..||.||:
  Rat   400 IGHKGSGIKKIMSEFDVHTQVSQPGGNSDIISIMGLAAKVNQAKIKLEKQINALQTEIEDRALRN 464

  Fly  1074 FVLQVDVDTEFHSKLIGRHGAVINKLRADHDVIISLPKRD--EPNDRIISITGYQANAEAARDAI 1136
            |.|...:|.::||.:.|..|..|.::..:|||.|..||:.  |..|: |:||||:.|..||:|||
  Rat   465 FKLMFTLDAKYHSMITGHKGLFIAQICREHDVNIHFPKKSNREIQDQ-ITITGYKNNTLAAKDAI 528

  Fly  1137 LEIVGDPETLHREVIEIDKRIHPHLIGQRRRTIRKIIEDNKVNIKFSADDDNPNSIFISGKIEDV 1201
            :.::...|....:.|.::.::...:.|...:.|.::.|...|:|:.........:|.:.|..|.|
  Rat   529 MRMLYKIEKTVSKEIPVNPQVRDSIFGFGGKYIHRLNEQLHVDIRLPPKGSWNTNITVIGLPEKV 593

  Fly  1202 -ENVKELLFGMAEDYERDYLD------------------NVAIAPPTIGAFLTGQGSGSDAAGAS 1247
             |.:..:|     |.|:.||.                  .:.:.||..        ||.      
  Rat   594 QEAIDHIL-----DLEKYYLSVVIKYDSQLENLKNTCLYKITMEPPRF--------SGK------ 639

  Fly  1248 ENGFVIKDAPWEKQKQAKNLTAPNTQSQEDFPHFAAGGAPVASTPITSVWGP 1299
                  ||.| ...|...|  :|:..| |||.....     .:.|.|..|.|
  Rat   640 ------KDVP-HSSKPTPN--SPHDDS-EDFHKLKQ-----QTHPKTHPWRP 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dp1NP_523781.2 KH-I_Vigilin_rpt1 95..162 CDD:411833
KH-I_Vigilin_rpt2 165..239 CDD:411834
KH-I_Vigilin_rpt3 243..>290 CDD:411835
KH-I_Vigilin_rpt4 315..376 CDD:411836
KH-I_Vigilin_rpt5 382..449 CDD:411837
KH-I_Vigilin_rpt6 451..517 CDD:411804
KH-I_Vigilin_rpt7 522..588 CDD:411838
KH-I_Vigilin_rpt8 599..659 CDD:411839 7/35 (20%)
KH-I_Vigilin_rpt9 668..737 CDD:411840 28/68 (41%)
KH-I_Vigilin_rpt10 741..806 CDD:411841 23/64 (36%)
KH-I_Vigilin_rpt11 817..882 CDD:411842 20/64 (31%)
KH-I_Vigilin_rpt12 890..991 CDD:411843 35/104 (34%)
KH-I_Vigilin_rpt13 993..1070 CDD:411844 26/76 (34%)
KH-I_Vigilin_rpt14 1074..1144 CDD:411845 27/71 (38%)
KH-I_Vigilin_rpt15 1147..1214 CDD:411846 12/67 (18%)
RGD1561230NP_001100438.1 KH-I 69..136 CDD:469614 28/69 (41%)
KH-I 140..201 CDD:469614 23/60 (38%)
KH-I 216..280 CDD:469614 20/63 (32%)
KH-I 293..382 CDD:469614 34/100 (34%)
KH-I 384..461 CDD:469614 26/76 (34%)
KH-I_Vigilin_rpt14 465..537 CDD:411845 27/72 (38%)
KH-I 539..604 CDD:469614 13/69 (19%)
Blue background indicates that the domain is not in the aligned region.

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