DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GstE6 and Gdap1

DIOPT Version :9

Sequence 1:NP_611328.1 Gene:GstE6 / 37111 FlyBaseID:FBgn0063494 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001101367.1 Gene:Gdap1 / 312890 RGDID:1309005 Length:358 Species:Rattus norvegicus


Alignment Length:236 Identity:47/236 - (19%)
Similarity:77/236 - (32%) Gaps:65/236 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VKLTLYGLDPSPPVRAVKLTLAALNLTYEYVNVDIVARAQLSPEYLEKNPQHTVPTLEDDGHYIW 66
            |:|.||....|...:.|:|.:|...|..|..:|.:.......|.::..|....||.|....:.|.
  Rat    24 VRLILYHWTHSFSSQKVRLVIAEKALKCEEHDVSLPLSEHNEPWFMRLNSTGEVPVLIHGENIIC 88

  Fly    67 DSHAIIAYLVSKYAD----------SDALYPKDPLKRAVVDQR----------LHFESGV----- 106
            ::..||.||...:.|          ....||:....|.::|..          ||.|..|     
  Rat    89 EATQIIDYLEQTFLDERTPRLMPDEGSMYYPRVQHYRELLDSLPMDAYTHGCILHPELTVDSMIP 153

  Fly   107 ------------------------------VFANGIRSISKSVLFQGQTKVPKERYDAIIEIYDF 141
                                          .:....:.:...:|.....|..|:..|.:.::.|.
  Rat   154 AYATTRIRGQIGNTESELKKLAEENPDLQEAYIAKQKRLKSKLLDHDNVKYLKKILDELEKVLDQ 218

  Fly   142 VETFLK----------GQDYIAGNQLTIADFSLVSSVASLE 172
            |||.|:          .|.::.|...|:||.||..::..|:
  Rat   219 VETELQRRNEETPDEGNQPWLCGESFTLADVSLAVTLHRLK 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GstE6NP_611328.1 GstA 4..196 CDD:223698 46/234 (20%)
GST_N_Delta_Epsilon 4..77 CDD:239343 20/72 (28%)
GST_C_Delta_Epsilon 91..209 CDD:198287 23/137 (17%)
Gdap1NP_001101367.1 GstA 26..292 CDD:223698 46/234 (20%)
GST_N_GDAP1 26..98 CDD:239350 19/71 (27%)
GST_C_GDAP1 179..289 CDD:198336 17/81 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348320
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.