DRSC/TRiP Functional Genomics Resources

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Protein Alignment Idgf5 and lmd-5

DIOPT Version :10

Sequence 1:NP_611321.3 Gene:Idgf5 / 37104 FlyBaseID:FBgn0064237 Length:444 Species:Drosophila melanogaster
Sequence 2:NP_001309512.1 Gene:lmd-5 / 187942 WormBaseID:WBGene00020141 Length:1518 Species:Caenorhabditis elegans


Alignment Length:452 Identity:90/452 - (19%)
Similarity:162/452 - (35%) Gaps:125/452 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 AEVGKLVCFYDAQSFVREGPAQMSLAELEPALQFCNFLVYGYAGIDAVTYKIKSLDPSLTNDRQH 90
            |..||.:..|    :...|..:::..:|:.........|..||........:.:.||.....::.
 Worm   986 ASCGKRIVGY----YTGWGEREITENQLKKLTHVIFAFVAMYADGSVKFGPVSADDPGPQAGKKA 1046

  Fly    91 YRHITALRKK----YPHVRFLLSVGG--DRDVNSEGVADSDKYLRLLEQSEHRKSFQASVLAELN 149
            .|....::||    ...||.|.:|||  :....|...|||.|          |::|..||.:.:.
 Worm  1047 ERRFVDMKKKARAVNSGVRVLFAVGGWDNSQYFSSVAADSGK----------RRNFVDSVASFIE 1101

  Fly   150 NNGFDGIDLAWQFPKNRPKLQQGVFKRVWGSLRGWFSSSSVDEKSEEHREQFATLLEELQS---- 210
            ::..||:||.|::|                            |.....::...||:.||:.    
 Worm  1102 HHKIDGVDLDWEYP----------------------------EMKGGDKQNHVTLIRELRERFNG 1138

  Fly   211 ----DLRRGGQLLTVSMLPHVSAELFI----DVPKVLSNVDFVNLGTYDF--QTPERDPKVADLP 265
                :.|:...|:|   |...:.|..:    |:..:|:..||:|:.|||:  ....:.......|
 Worm  1139 MASRNNRKDPYLIT---LASAAGEWNLREGYDLKGILNYADFINVMTYDYYGAWESKWGAYTGTP 1200

  Fly   266 TPLY--AMYDRDPSHNVQYQVQYWMNQTSEISVHKLHVGVTSYGRAWNMTRNSGITGYPPIPAAN 328
            .|||  ::.......|..:.::::...|.:.|  :|.:||..|||.|...       ..||.|::
 Worm  1201 APLYFGSLKGFSGKLNADFSMKFYACNTKKPS--QLTMGVPFYGRYWKNV-------LEPIDASD 1256

  Fly   329 G---AAPPGRQTVTPGLLSWPEICDLLQQQPQDR---------EVPHLRKVGDPTKRFGIYAYRA 381
            .   .|.|.......|.:.|..    |:::..::         :.|::.                
 Worm  1257 NMWRTAAPQNGKYEGGYVGWRN----LEKEGWNKGSATWHKKTKTPYIM---------------- 1301

  Fly   382 ADDQGENG--LWVGYEDPLTAAIKAGFVHAQGLGGVAFHDLSMDD----------FRGQCAG 431
                 .||  :::|:|:..:...|..:...:.|||:....|.:||          ..|.|:|
 Worm  1302 -----NNGARMFLGFENERSLKEKMDYATNRNLGGLMIWALDLDDDADTLLNLVSSAGLCSG 1358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Idgf5NP_611321.3 GH18_IDGF 30..444 CDD:119352 88/448 (20%)
lmd-5NP_001309512.1 LysM 22..65 CDD:197609
LysM 77..120 CDD:197609
LysM 151..194 CDD:197609
LysM 220..260 CDD:197609
LysM 275..312 CDD:197609
LysM 386..429 CDD:197609
Self-incomp_S1 851..940 CDD:461784
Glyco_18 991..1336 CDD:214753 81/423 (19%)
ChtBD1_GH18_2 1388..1435 CDD:211315
ChtBD1_GH18_2 1462..1513 CDD:211315
Blue background indicates that the domain is not in the aligned region.

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