DRSC/TRiP Functional Genomics Resources

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Protein Alignment Idgf5 and lmd-4

DIOPT Version :9

Sequence 1:NP_611321.3 Gene:Idgf5 / 37104 FlyBaseID:FBgn0064237 Length:444 Species:Drosophila melanogaster
Sequence 2:NP_504862.2 Gene:lmd-4 / 179121 WormBaseID:WBGene00017233 Length:2011 Species:Caenorhabditis elegans


Alignment Length:374 Identity:83/374 - (22%)
Similarity:136/374 - (36%) Gaps:121/374 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 VRFLLSVGG--DRDVNSEGVADSDKYLRLLEQSEHRKSFQASVLAELNNNGFDGIDLAWQFP--- 163
            ||.|.:|||  :....|...|||.|          ||.|..|:.:.:.:...||:||.|::|   
 Worm  1553 VRVLFAVGGWDNSQYFSSVAADSGK----------RKKFVDSIASFVEDQKIDGVDLDWEYPDSN 1607

  Fly   164 ----KNRPKLQQGVFKRVWGSLRGWFSSSSVDEKSEEHREQFATLLEELQSD--LRRGGQLLTVS 222
                ||..:|.:        .:|..||..:   |.::.::.:...|.....:  ||:|       
 Worm  1608 GKDAKNHVQLIK--------EIREKFSEMA---KKKKRKDPYVITLASAAGEWNLRKG------- 1654

  Fly   223 MLPHVSAELFIDVPKVLSNVDFVNLGTYDF--QTPERDPKVADLPTPLY--AMYDRDPSHNVQYQ 283
                      .|:..:|...||:|:.|||:  ....:.......|.|||  ::.......|..:.
 Worm  1655 ----------YDLKGILKYADFINVMTYDYYGAWESKWGAYTGTPAPLYFGSLKGFSGKLNADFS 1709

  Fly   284 VQYWMNQTSEISVHKLHVGVTSYGRAW-----------NMTRNSGITGYPPIPAANGAAPPG--- 334
            ::::..:|.:.|  :|::||..|||.|           ||.|    |..|    .||....|   
 Worm  1710 MKFYACKTEKPS--QLNMGVPFYGRYWKNVLGPIDKSDNMWR----TAAP----QNGKYEGGYVG 1764

  Fly   335 -----RQTVTPGLLSWPEICDLLQQQPQDREVPHLRKVGDPTKRFGIYAYRAADDQGENGLWVGY 394
                 ::....|..||.|          ..:.|::...|  .|:|                 :|:
 Worm  1765 WRNLAKEGWNKGSASWHE----------KTKTPYIMNNG--AKKF-----------------LGF 1800

  Fly   395 EDPLTAAIKAGFVHAQGLGGVAFHDLSMDD----------FRGQCAGEK 433
            |:..:...|..:...:.|||:....|.:||          ..|.|:|.|
 Worm  1801 ENERSLKEKMKYATDRNLGGLMIWALDLDDDADTLLNLVSSAGLCSGGK 1849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Idgf5NP_611321.3 GH18_IDGF 30..444 CDD:119352 83/374 (22%)
Glyco_18 30..423 CDD:214753 77/352 (22%)
lmd-4NP_504862.2 LysM 25..65 CDD:197609
LysM 79..120 CDD:197609
LysM 142..185 CDD:197609
LysM 209..250 CDD:197609
LysM 270..313 CDD:197609
LysM 334..377 CDD:197609
LysM 401..444 CDD:197609
LysM 469..509 CDD:197609
LysM 550..590 CDD:197609
LysM 635..678 CDD:197609
LysM 710..750 CDD:197609
LysM 760..802 CDD:197609
LysM 876..919 CDD:197609
Self-incomp_S1 1359..1433 CDD:283566
Glyco_18 1480..1825 CDD:214753 76/348 (22%)
GH18_chitinase-like 1481..1824 CDD:299167 76/347 (22%)
ChtBD1_GH18_2 1873..1924 CDD:211315
ChtBD1_GH18_2 1951..2002 CDD:211315
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164518
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.700

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