DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nopo and traip

DIOPT Version :9

Sequence 1:NP_611305.1 Gene:nopo / 37083 FlyBaseID:FBgn0034314 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001017318.1 Gene:traip / 550072 XenbaseID:XB-GENE-922321 Length:463 Species:Xenopus tropicalis


Alignment Length:467 Identity:116/467 - (24%)
Similarity:216/467 - (46%) Gaps:69/467 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CVICAELFGQADEVFATVCGHMFHHNCLNQWLDRS--KTCPQCRNKCTTRNIF-RVYFNLANLDV 67
            |.||::.|..:.:|.|..|||.||..||.||...:  :||||||.:.::|.|. :::|::...:.
 Frog     7 CTICSDFFDNSRDVAAVTCGHTFHQECLLQWFHSAPHRTCPQCRIQVSSRQIINKLFFDIGGEEE 71

  Fly    68 SHIDVGSLQEQLDNAMLSMKMVEKERNKDEQQIRDLKETQKKCLKTIAGLEQKVQKKDFLISSYV 132
            :.:|..||:.::|...:|:...|||:.:.:..:..|:|.......||..|::::...:.|.|:..
 Frog    72 TVLDPESLKNEVDRIKVSLLAKEKEKRECQGLVDSLREMLDVRNVTIQSLQKELGDMEMLCSTLK 136

  Fly   133 EQIGVLKSDAHVVDGLRKENKTLKSQIQSMEGISAILAAGSADADRLLKN----EADPHVLANWV 193
            :|:..|.:........:.|.:.|::::::||.|..:|.|...:.:.:::|    :|....||.:.
 Frog   137 KQMKFLDNQKSETKAAKDEARKLRNKLKTMESIEVLLQAQRPEVEEMIRNMGSGQAAVEQLAIYC 201

  Fly   194 STLK------RELRQCESKKTE-LRNVVKVVQNDLRK-EIELKRKLEERVSHLESDLYQAQEKLQ 250
            .:||      :|:|:..::.|| ||..:....|..:| |::| .|:.|.:|..:.:|:.|.:::.
 Frog   202 VSLKKEYENLKEVRKSSAEMTEKLRKEIFASNNKAQKAELQL-TKVREELSASQKELHNADKEIM 265

  Fly   251 AFENKTAYLD----SPNASCGLNSNI-------LALKREERR-----TTISPTVKENIKRIEEST 299
            :.:.|..:|.    :|.||....|.:       :.|:|.:.|     ..|:..|..:|...|.||
 Frog   266 SLKKKVEFLQKTLTTPTASNEAISRLIFESPAPIGLERPKLRPPIMGNDINLDVTFDIDTPEHST 330

  Fly   300 -----SPYLNIKSSSVGLAHLLNTKGNIGLAKSKISPIKGVGGGVSMTSGTIRKTSSDLS----- 354
                 :|:..:|..|........||          :|::...|.:|...|.......||:     
 Frog   331 QKAVVAPFKKMKFDSKESPMSSPTK----------TPLQESKGLMSWAGGKAGADEDDLTLPSFI 385

  Fly   355 EKYSIFKKPRLLLGSSSSSALTATTGS-NFVYNGMGGSEK---------VDPFAQRAEEEGLSTI 409
            :...|.|||   :||..|  |...||: ...::|:||..|         :.|..|:.:.:.:|  
 Frog   386 KNSLIHKKP---VGSLLS--LRQNTGAVRTGFDGLGGRTKFIQPSNLTEIRPLHQKMKRKKVS-- 443

  Fly   410 RSSTALSRNVNQ 421
            |.:...|...||
 Frog   444 RPTACTSSLANQ 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nopoNP_611305.1 zf-RING_2 5..47 CDD:290367 19/42 (45%)
zf-rbx1 <5..47 CDD:289448 19/42 (45%)
traipNP_001017318.1 RING-H2_TRAIP 6..50 CDD:319394 19/42 (45%)
RING-H2 finger (C3H2C3-type) 7..49 CDD:319394 18/41 (44%)
Smc <69..>275 CDD:224117 46/206 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I9813
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 113 1.000 Inparanoid score I4711
OMA 1 1.010 - - QHG50113
OrthoDB 1 1.010 - - D581741at33208
OrthoFinder 1 1.000 - - FOG0006979
OrthoInspector 1 1.000 - - oto104378
Panther 1 1.100 - - LDO PTHR46569
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3349
SonicParanoid 1 1.000 - - X4425
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.110

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