DRSC/TRiP Functional Genomics Resources

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Protein Alignment nopo and Sce

DIOPT Version :9

Sequence 1:NP_611305.1 Gene:nopo / 37083 FlyBaseID:FBgn0034314 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_477509.1 Gene:Sce / 43327 FlyBaseID:FBgn0003330 Length:435 Species:Drosophila melanogaster


Alignment Length:101 Identity:24/101 - (23%)
Similarity:41/101 - (40%) Gaps:16/101 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LNCVICAELFGQADEVFATVCGHMFHHNCLNQWL-DRSKTCPQCRNKCTTRNIFRVYFN----LA 63
            |.|.||.::..:.  :....|.|.|..:|:...| ..:|.||.||.|..::...|...|    ::
  Fly    44 LMCPICLDMLKKT--MTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADPNFDLLIS 106

  Fly    64 NLDVSHIDVGSLQEQLDNAMLSMKMVEKERNKDEQQ 99
            .:..|..:..::||         |::.|......||
  Fly   107 KIYPSREEYEAIQE---------KVMAKFNQTQSQQ 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nopoNP_611305.1 zf-RING_2 5..47 CDD:290367 11/42 (26%)
zf-rbx1 <5..47 CDD:289448 11/42 (26%)
SceNP_477509.1 RING 45..89 CDD:238093 13/45 (29%)
RAWUL 336..431 CDD:292824
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3349
SonicParanoid 00.000 Not matched by this tool.
21.940

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