DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nopo and Traip

DIOPT Version :9

Sequence 1:NP_611305.1 Gene:nopo / 37083 FlyBaseID:FBgn0034314 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001102474.1 Gene:Traip / 367167 RGDID:1309761 Length:469 Species:Rattus norvegicus


Alignment Length:477 Identity:109/477 - (22%)
Similarity:204/477 - (42%) Gaps:93/477 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CVICAELFGQADEVFATVCGHMFHHNCLNQWLDR--SKTCPQCRNKCTTRNIF-RVYFNLANLDV 67
            |.||::.|..:.:|.|..|||.||..||.||.:.  |:||||||.:...:.|. :::|:||..:.
  Rat     7 CTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKKTIINKLFFDLAQEEE 71

  Fly    68 SHIDVGSLQEQLDN--AMLSMKMVEKERNKDEQQIRD-LKETQKKCLKTIAGLEQKVQKKDFLIS 129
            |.:|...|:.:||:  |.||.|..||   :|.|.|.| |::|.::...|:..|:..:.|.:.|.|
  Rat    72 SVLDAEFLKNELDSIKAQLSQKDREK---RDSQAIIDTLRDTLEERNATVESLQNALNKAEMLCS 133

  Fly   130 SYVEQIGVLKSDAHVVDGLRKENKTLKSQIQSMEGISAILAAGSADADRLLKN----EADPHVLA 190
            :..:|:..|:.........::|.:.|||::::||.|..:|.:..::.:.::::    ::....||
  Rat   134 TLKKQMKFLEQQRDETKHAQEEARQLKSKMKTMEQIELLLQSQRSEVEEMIRDMGVGQSAVEQLA 198

  Fly   191 NWVSTLKRELRQCESKKTELRNVVKVVQNDLRKEIELKRKLEERVSHLESDLYQAQEKLQAFENK 255
            .:..:||:|....:    |.|.....:.:.|||::...|   .::..:.::|.||:.:|::.:..
  Rat   199 VYCISLKKEYENLK----EARKASGELADRLRKDLASSR---SKLKTVNTELDQAKLELRSAQKD 256

  Fly   256 TAYLDSPNASCGLNSNILALKREERRTTISPTVKENIKR-IEESTSPYLNIK--------SSSVG 311
            ....|....|......||     :...::.|...|.:.| :.||.:|...:|        |..:.
  Rat   257 LQSADKEITSLRKKLTIL-----QGTLSLPPVTSETVSRLVFESPAPVEMLKPRLHRPPFSDEID 316

  Fly   312 L----------------AHLLNTKGNIGLAKSKISPI------------KGVGGGVSMTSGTIRK 348
            |                .|....|..:..|:|.:..|            ..:||     ...:.:
  Rat   317 LNATFDVNTPPAQTSSSQHCHPKKLCLERARSPMQDILKIPKVSKSESQLSLGG-----QRCVGE 376

  Fly   349 TSSDLSEKYSIF--------KKPRLLLGSSSSSALTATTGSNFVYNGMGGSEK------------ 393
            ...:|:..:.:|        |:|......|..|......|    ::|:||..|            
  Rat   377 PDEELAGAFPLFIRNAVRGQKQPNRTTAESRYSTDVVRIG----FDGLGGRTKFIQPTDPTIIRP 437

  Fly   394 --VDPFAQRAEEEGLSTIRSST 413
              |.|.|:..::..:.|:.|::
  Rat   438 MPVKPKAKSKQKVRIKTVNSAS 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nopoNP_611305.1 zf-RING_2 5..47 CDD:290367 20/42 (48%)
zf-rbx1 <5..47 CDD:289448 20/42 (48%)
TraipNP_001102474.1 zf-RING_2 7..50 CDD:290367 20/42 (48%)
BAR 106..>264 CDD:299863 33/164 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 64 1.000 Domainoid score I9961
eggNOG 1 0.900 - - E1_KOG0827
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 107 1.000 Inparanoid score I4833
OMA 1 1.010 - - QHG50113
OrthoDB 1 1.010 - - D581741at33208
OrthoFinder 1 1.000 - - FOG0006979
OrthoInspector 1 1.000 - - oto97691
orthoMCL 1 0.900 - - OOG6_107085
Panther 1 1.100 - - LDO PTHR46569
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4425
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.840

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