DRSC/TRiP Functional Genomics Resources

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Protein Alignment nopo and Rnf150

DIOPT Version :10

Sequence 1:NP_611305.1 Gene:nopo / 37083 FlyBaseID:FBgn0034314 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001178022.1 Gene:Rnf150 / 364983 RGDID:1304572 Length:437 Species:Rattus norvegicus


Alignment Length:191 Identity:44/191 - (23%)
Similarity:77/191 - (40%) Gaps:47/191 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NCVICAELFGQADEVFATVCGHMFHHNCLNQWLDRSKTCPQCRNKCTTRNIFR---VYFNLANLD 66
            ||.:|.|.:..:|.|....|.|:||.:|::.||...:|||.|:     .||.:   :..|...:|
  Rat   276 NCAVCIEGYKPSDVVRILPCRHLFHKSCVDPWLLDHRTCPMCK-----MNILKALGIPPNADCMD 335

  Fly    67 VSHIDV-GSL----QEQLDNAMLSMKMVEKERNKDEQQIRDLKETQKKCLKTIAGLEQKVQKKD- 125
            ...||. |||    ..|:..|             .:..:.:...|....::|:..| |.||..| 
  Rat   336 DLPIDFEGSLGGPPTNQITGA-------------SDTTVNESSVTLDPAVRTVGAL-QVVQDPDP 386

  Fly   126 ------FLISSYVEQIGVLKSDAHVVDGLRKENKTLKSQIQSME-GISAILAAGSADADRL 179
                  .:.::..:|...:.||:.:            |.|.::| |:|.:..:...|.:.:
  Rat   387 APQEGEAIFTTNSDQEPAVSSDSDI------------SLIMALEVGLSDVELSTDQDCEEV 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nopoNP_611305.1 RING-H2_TRAIP 5..47 CDD:438143 16/41 (39%)
SMC_N <75..>255 CDD:481474 19/117 (16%)
Rnf150NP_001178022.1 PA_GRAIL_like 45..192 CDD:239037
RING-H2_RNF150 269..323 CDD:438456 19/51 (37%)
Blue background indicates that the domain is not in the aligned region.

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