DRSC/TRiP Functional Genomics Resources

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Protein Alignment nopo and rnf128a

DIOPT Version :10

Sequence 1:NP_611305.1 Gene:nopo / 37083 FlyBaseID:FBgn0034314 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_997780.1 Gene:rnf128a / 322325 ZFINID:ZDB-GENE-030131-1044 Length:389 Species:Danio rerio


Alignment Length:45 Identity:16/45 - (35%)
Similarity:23/45 - (51%) Gaps:2/45 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CVICAELFGQADEVFATVCGHMFHHNCLNQWLDRSKTCPQCRNKC 50
            |.:|.:.:...|.:....|.|.||.:|:..||...:|||.|  ||
Zfish   256 CAVCIDSYKAGDVLSILTCNHFFHKSCIEPWLLEHRTCPMC--KC 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nopoNP_611305.1 RING-H2_TRAIP 5..47 CDD:438143 13/40 (33%)
SMC_N <75..>255 CDD:481474
rnf128aNP_997780.1 PA_GRAIL_like 38..172 CDD:239037
HRD1 <185..>297 CDD:227568 14/42 (33%)
RING-H2_RNF128-like 254..302 CDD:438454 16/45 (36%)
Blue background indicates that the domain is not in the aligned region.

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