DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10916 and Rlim

DIOPT Version :9

Sequence 1:NP_001261070.1 Gene:CG10916 / 37081 FlyBaseID:FBgn0034312 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_001345134.1 Gene:Rlim / 19820 MGIID:1342291 Length:600 Species:Mus musculus


Alignment Length:124 Identity:31/124 - (25%)
Similarity:42/124 - (33%) Gaps:53/124 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ESNSSEMEGN--GGKIAET-------AP-TNDSSPSLNIL------------------------- 31
            ||:|...||:  ||....:       || |.|.|.||..|                         
Mouse   466 ESSSEMFEGSSEGGSSGPSRRDGRHRAPVTFDESGSLPFLSLAQFFLLNEDDEDQPRGLTKEQID 530

  Fly    32 ---------------CAIC-NEFFRANDIIFSTSRCGHVFHKDCLTRWLNRSRTCPQCR 74
                           |::| .|:...|.:  ....|.|.:|..|:.|||:.:.|||.||
Mouse   531 NLAMRSFGENDALKTCSVCITEYTEGNKL--RKLPCSHEYHVHCIDRWLSENSTCPICR 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10916NP_001261070.1 zf-RING_2 32..74 CDD:290367 14/42 (33%)
zf-rbx1 <32..74 CDD:289448 14/42 (33%)
DM9 105..183 CDD:128937
DUF3421 133..246 CDD:288732
DM9 186..254 CDD:128937
RlimNP_001345134.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 49..355
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..497 10/30 (33%)
RING_Ubox 544..588 CDD:388418 16/46 (35%)
PDZ-binding. /evidence=ECO:0000255 597..600
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.