DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dgp-1 and gtpbp2

DIOPT Version :9

Sequence 1:NP_611302.1 Gene:Dgp-1 / 37080 FlyBaseID:FBgn0027836 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001072714.1 Gene:gtpbp2 / 780171 XenbaseID:XB-GENE-996416 Length:584 Species:Xenopus tropicalis


Alignment Length:584 Identity:265/584 - (45%)
Similarity:375/584 - (64%) Gaps:39/584 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PNGVAVGVGI--------------KSARSNIFNVDGLPQQMAAMSVDYSSIRGKDVLVQPTEEQI 58
            |.|.:.|.|.              :|::||  |...||.:....:::|     |..||.|::.:.
 Frog    11 PAGGSGGTGARGKTKGKKAGKGRGRSSKSN--NPPYLPPEAEEGNIEY-----KLKLVNPSQYRF 68

  Fly    59 ELLQKRLQDRIADNCGETIYEIGVGEDGSDSGLNPEQFEASVATLHLLAANIDADVVKLRERRAE 123
            |.|..:::.|:.:..||.:|:|||.::|...||:.|:.:||:.|||.:|..:.||:..||||..:
 Frog    69 EHLVTQMKWRLQEGRGEAVYQIGVEDNGLLVGLSEEEMKASLHTLHRMAEKVGADITVLREREVD 133

  Fly   124 KGQSA-----QFLIRKHIDTTDFMEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQRLFRHK 183
            ....:     :.||||..|...|:::||||:||||:||||||||||.||||||||.||..||||.
 Frog   134 YDSDSPRKITEVLIRKVPDNQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHL 198

  Fly   184 HEIESGRTSSVGNDILGFDGVGNVVNKPDHGHLDWVKICENSAKVITFIDLAGHERYLKTTVFGM 248
            |||:||||||:..:||||:..|.|:|..:....:  :|||:::|:|||||||||.:|||||:||:
 Frog   199 HEIQSGRTSSISFEILGFNSKGEVINYSESRTAE--QICESASKMITFIDLAGHHKYLKTTIFGL 261

  Fly   249 TGHAPDFGMLMIGANAGIIGMTKEHLGLALALAVPVFVVVTKIDMCPANVLQENMKLLFKMLKSQ 313
            |.:.|||.||::.||.||.|.|:||||||:||.||.|:||:|:|:|.|..::..::.|.:.||..
 Frog   262 TSYCPDFAMLVVSANTGIAGTTREHLGLAMALKVPFFLVVSKVDLCAAATVERTLRQLERTLKQP 326

  Fly   314 GCRKVPVVVRSHDDVVLSATNFV-SERLCPIFQVSNVTGDNLELLKMFLNLLSTRMPGSE----- 372
            ||.|||.:|||.||.|.:|..|. |..:.|||.:|:|||::|:|||:|||:|.......|     
 Frog   327 GCNKVPFMVRSEDDAVTAAQQFAQSPNITPIFAISSVTGESLDLLKVFLNILPPLTNSHEQEELM 391

  Fly   373 -SLPAEFQIDDVYAVPGVGTVVSGTCLQGTIRLNDCLMLGPDAVGSFVPITIKSIHRKRMNVARV 436
             .|| |||:|::|.||.|||||.||...|..:..:.|::||...|.|:|:.:.||.|.|.....:
 Frog   392 QQLP-EFQVDEIYTVPEVGTVVGGTLYSGVCKEGEHLVVGPTDGGGFLPLKVCSIQRNRSTCRVL 455

  Fly   437 RCGQTASFALKKIKRAYLRKGMVMVSQDLKPQACWEFEGEILVLHHPTTISARYQAMVHCGSIRQ 501
            |.||.|:.||.:.:|:.||||||:||.:..|..||.||.||::|.|.|:.....|..||.|::||
 Frog   456 RAGQAATLALGEFERSLLRKGMVLVSPEALPTVCWVFEAEIVLLFHATSCRQGVQVTVHVGNVRQ 520

  Fly   502 TASIIHM-SRDCLRTGDKAHVKFRFIKQPEYIRAGQRLVFREGRTKAVGNI--LRPLPNAAASP 562
            ||.:.|: .:|.||||:||.|:|||||.|||::.|.:|:||||.||.:|::  |:.:..|...|
 Frog   521 TAVLEHIHGKDELRTGEKAVVRFRFIKHPEYLKPGTKLLFREGMTKGIGHVCSLQVIATAIGDP 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dgp-1NP_611302.1 GTPBP1 38..555 CDD:227583 253/531 (48%)
GTPBP1_like 145..367 CDD:206728 129/222 (58%)
GTPBP_II 376..462 CDD:293895 38/85 (45%)
GTPBP_III 468..553 CDD:294007 43/87 (49%)
gtpbp2NP_001072714.1 SelB 45..571 CDD:332589 254/533 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D305827at33208
OrthoFinder 1 1.000 - - FOG0002013
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.