DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dgp-1 and mEFTu1

DIOPT Version :9

Sequence 1:NP_611302.1 Gene:Dgp-1 / 37080 FlyBaseID:FBgn0027836 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001163144.1 Gene:mEFTu1 / 44438 FlyBaseID:FBgn0024556 Length:489 Species:Drosophila melanogaster


Alignment Length:520 Identity:118/520 - (22%)
Similarity:197/520 - (37%) Gaps:131/520 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 ASVATLHLLAANIDADVVKLRERRA-----EKGQSAQFLIRKHIDTTDFME-----IRVAVVGNV 152
            :|...|.:..|...:...|..:|..     ..|...|:| |::.:.....|     ..|..:|:|
  Fly    28 SSARMLRMAGATATSTACKDWQRNGLLAAPRTGNMQQYL-REYANEKKVFERTKPHCNVGTIGHV 91

  Fly   153 DAGKSTLLGVLT-------------HGELDNGRGHARQRLFRHKHEIESGRTSSVGNDILGFDGV 204
            |.||:||...:|             :.|:||.           ..|...|.|.:|.:       |
  Fly    92 DHGKTTLTAAITKVLADKQLAESKKYNEIDNA-----------PEEKARGITINVAH-------V 138

  Fly   205 GNVVNKPDHGHLDWVKICENSAKVITFIDLAGHERYLKTTVFGMTGHAP-DFGMLMIGANAGIIG 268
            ........:||.|    |            .||..|:|..:   ||.|. |..:|::.|..|.:.
  Fly   139 EYQTETRHYGHTD----C------------PGHADYIKNMI---TGTAQMDGAILVVAATDGAMP 184

  Fly   269 MTKEHLGLALALAVP-VFVVVTKIDMCPANVL----QENMKLLFKMLKSQGCRKVPVVVRSHDDV 328
            .|:||:.||..:.:. :.|.:.|:|.....::    .|..:||.:|  .....|:|||..|    
  Fly   185 QTREHMLLAKQIGIDHIVVFINKVDAADEEMVDLVEMEIRELLTEM--GYDGDKIPVVKGS---- 243

  Fly   329 VLSATNFVSERLCPIFQVSNVTGDN--LELLKMFLNLLSTRMPGSE-SLPAEFQIDDVYAVPGVG 390
                      .||.:...|...|..  |:||:...:.:.|  |..| ..|....:::||::||.|
  Fly   244 ----------ALCALEDKSPEIGKEAILKLLQEVDSFIPT--PVRELDKPFLLPVENVYSIPGRG 296

  Fly   391 TVVSGTCLQGTIRLN-DCLMLGPDAVGSFVPITIKSIHRKRMNVARVRCGQTASFALKKIKRAYL 454
            |||:|...:|.::.. :|..:|.:.|   :..|:..:......:...:.|......::.:||..:
  Fly   297 TVVTGRLERGVVKKGMECEFVGYNKV---LKSTVTGVEMFHQILEEAQAGDQLGALVRGVKRDDI 358

  Fly   455 RKGMVMVSQDLKP---QACWEFEGEILVLHHPTTISARYQAMVHCGSIRQTASIIHM---SR--D 511
            ::||||    .||   :|..:.|.::.:|           :....|..:...|.|.:   ||  |
  Fly   359 KRGMVM----CKPGSVKALDQLEAQVYIL-----------SKDEGGRTKPFMSFIQLQMFSRTWD 408

  Fly   512 C-----------LRTGDKAHVKFRFIKQPEYIRAGQRLVFREGR----TKAVGNILRPLPNAAAS 561
            |           :..|:...:..|.|: |..:..|||...|:|.    |..|.:.|.||..:..|
  Fly   409 CAVQVQIPDKEMVMPGEDTKLILRLIR-PMVLEQGQRFTLRDGNLTLGTGVVTSTLPPLTESQRS 472

  Fly   562  561
              Fly   473  472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dgp-1NP_611302.1 GTPBP1 38..555 CDD:227583 115/512 (22%)
GTPBP1_like 145..367 CDD:206728 56/242 (23%)
GTPBP_II 376..462 CDD:293895 21/86 (24%)
GTPBP_III 468..553 CDD:294007 21/104 (20%)
mEFTu1NP_001163144.1 PRK00049 73..463 CDD:234596 105/463 (23%)
EF_Tu 81..274 CDD:206671 57/247 (23%)
EFTU_II 282..368 CDD:293898 22/92 (24%)
mtEFTU_III 371..462 CDD:294005 21/102 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464553
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR43721
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.