DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dgp-1 and HBS1

DIOPT Version :9

Sequence 1:NP_611302.1 Gene:Dgp-1 / 37080 FlyBaseID:FBgn0027836 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001286906.1 Gene:HBS1 / 117365 FlyBaseID:FBgn0042712 Length:670 Species:Drosophila melanogaster


Alignment Length:554 Identity:118/554 - (21%)
Similarity:189/554 - (34%) Gaps:165/554 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 TIYEIGVGEDGSDSGLNPEQFEASVATLHLLAANIDADVVKLRERRAEKGQSAQFLIRKHIDTTD 140
            |..:|..|:|.|.|                     .|.|.|:.:.:|.: .:.|...::..|...
  Fly   204 TPVDISAGDDISRS---------------------SATVFKVSKEQAVR-NARQLYEKERADQKS 246

  Fly   141 FMEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQRLFRHKHEIES----------------- 188
              .|.:.|:|:||||||||:|.|.:     ..|:..||:. ||||.||                 
  Fly   247 --HIHMIVIGHVDAGKSTLMGHLLY-----DTGNVSQRVM-HKHEQESKKLGKQSFMYAWVLDET 303

  Fly   189 ------GRTSSVGNDILGFDGVGNVVNKPDHGHLDWVKICENSAKVITFIDLAGHERYLKTTVFG 247
                  |.|..||...:                       |...|::|.:|..||:.::...:.|
  Fly   304 GEERARGITMDVGQSRI-----------------------ETKTKIVTLLDAPGHKDFIPNMISG 345

  Fly   248 MTGHAPDFGMLMIGANAG-------IIGMTKEHLGLALALAV-PVFVVVTKIDMCPANVLQENMK 304
            .|  ..|..:|::.|..|       :.|.|:||..|..:|.| .:.||:.|:|  .....|:...
  Fly   346 AT--QADVALLVVDATRGEFESGFELGGQTREHAILVRSLGVNQLGVVINKLD--TVGWSQDRFT 406

  Fly   305 LLFKMLKSQGCRKVPVVVRSHDDVVLSATNF----VSERLCPIFQVSNVTGDNL----------- 354
            .:...|||                .|....|    ||...|     |.:||:||           
  Fly   407 EIVTKLKS----------------FLKLAGFKDSDVSFTPC-----SGLTGENLTKKAQEPALTN 450

  Fly   355 -----ELLKMFLNLLSTRMP-GSESLPAEFQIDDVYAVPGVGTVVSGTCLQGTIRLNDCLMLGPD 413
                 .||.:..|.   ::| .:...|....:.|:|...|.|..:||....|.:.|||.:::|  
  Fly   451 WYSGRHLLDVIENF---KIPERAIDRPLRMSVSDIYKGTGSGFCISGRVETGVLCLNDKVLVG-- 510

  Fly   414 AVGSFVPITIKSIHRKRMNVARVRCGQTASFALKKIKRAYLRKGMVMVSQDLKPQACWEFEGEIL 478
              .|.....:||:.........|..|...|..|..:....:..|.::............|:..|:
  Fly   511 --ASREQAQVKSLTMNEFPQTCVFAGDQVSVTLPALDINNVTVGCIISDPQTPIPVTTRFQARII 573

  Fly   479 V--------------LHHPTTIS----ARYQAMVHCGSIRQTASIIHMSRDCLRTGDKAHVKFR- 524
            |              |||.:.|.    .:..|.:|    :.|..::.....||.....|.|:.. 
  Fly   574 VFNVKVPITMGFPVLLHHQSLIEPAVVCKLTASIH----KSTGEVVKKKPRCLGNNSCALVELET 634

  Fly   525 -----FIKQPEYIRAGQRLVFREGRTKAVGNILR 553
                 ..:..::...|:.::...|.|.|.|.:.:
  Fly   635 SRPICIERYADFKELGRVMLRVAGVTIAAGMVTK 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dgp-1NP_611302.1 GTPBP1 38..555 CDD:227583 118/554 (21%)
GTPBP1_like 145..367 CDD:206728 65/272 (24%)
GTPBP_II 376..462 CDD:293895 19/85 (22%)
GTPBP_III 468..553 CDD:294007 19/108 (18%)
HBS1NP_001286906.1 HBS1_N 83..145 CDD:286079
TEF1 241..669 CDD:227581 107/495 (22%)
EF1_alpha 249..468 CDD:206670 65/275 (24%)
HBS1-like_II 474..557 CDD:293912 20/86 (23%)
HBS1_C_III 561..669 CDD:294008 19/112 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464667
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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