DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nup75 and npp-2

DIOPT Version :9

Sequence 1:NP_611300.2 Gene:Nup75 / 37078 FlyBaseID:FBgn0034310 Length:668 Species:Drosophila melanogaster
Sequence 2:NP_492256.1 Gene:npp-2 / 172611 WormBaseID:WBGene00003788 Length:598 Species:Caenorhabditis elegans


Alignment Length:633 Identity:133/633 - (21%)
Similarity:232/633 - (36%) Gaps:111/633 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 MAQESTLFDEPVLRSVLAEANATFATLQQLGSRATRAE---YVNISRAYRSIVRSCLEKLEQAKK 123
            ::|...:...|.||.::.|..:.|...|:..|.....:   ....||||||:    |.....:..
 Worm    39 VSQNRQILATPNLRRLVIEMYSVFDKCQKGSSPDAPLDTPTCCTFSRAYRSV----LYNAAVSHS 99

  Fly   124 SPEVQTDEARLQRLCDAIVVFYAAECLWHLFEILYI-QSNQLVVPQLLDWAR---FHSPHAEDRA 184
            |.:..||.|                 ||.|:|.|:. :.:..:...|:.||.   ..|..|.:.|
 Worm   100 SSDFMTDFA-----------------LWSLYEKLWFGRGDSSICADLISWANQSFTFSRGAMESA 147

  Fly   185 TDLLLMGEEASESDDYW-SIVKSLIMLGEIDVTRAVLSQNRKAGQTSFKAAEQILKSMPVYQEGY 248
            .:.|..|:...|  :|| .:..||:.....|...  |.:....|.......|.:....|......
 Worm   148 VEYLHPGKTIPE--EYWKGVAVSLLSCNFSDCVE--LLELHGGGSECDAFIEALTFFNPENLVDE 208

  Fly   249 ALQKFHSQWEFWHVDTERK-IQSGLFATEPELEQLIRLVAGDSEQWDAGIKESQD-FYEYLPGYL 311
            ||....::|:    |..|: :.||.:.:....:.|.:|:.|:.....:......| ::.:||.::
 Worm   209 ALANTVNEWK----DIMRENLTSGKYGSNENFKYLTKLLLGEERYLVSMASRIFDTWWHFLPFFV 269

  Fly   312 LFTKPTCKPFELKIAAAKWLNRWCLLRPEREQCSMNRMVSQLMDHDLRLFIYDAQKLNDTHWFST 376
            |...|.....|| |..|.......:...|.|....|.:...|:..|   .|...|.:....|.:.
 Worm   270 LVKNPFAGHVEL-IELADECRTLFVGEEEEEGAKENDVFWCLISKD---DINFQQLIASNPWLAV 330

  Fly   377 HLIDLIHHCGQLKSYFDQNNIDLPALRHSMIYEYGSYLMTSHNMWQLGIDYLDCCKQEGQAAIEL 441
            ||:||||     ||..|.   :...:|...:.:|.|.|::...:|::|..||..|..||...:|.
 Worm   331 HLVDLIH-----KSTLDP---EFEVMRKMHMLDYASVLISHSPLWEIGAGYLIACGTEGLLRLET 387

  Fly   442 LLPRITLRSERQATKLINLARQRGLISVEREICKVLSKRSYDNERYGNALEWAIR---------- 496
            .:..:.:..:..|.:|:.:..:..|...:..:...::.|......:.:.|.||::          
 Worm   388 HIEGLHIEDDEMAEQLLEICEEHRLEDAKSCVTNTMTFRYLKQGHWSSTLAWALKTGSKKTIDWT 452

  Fly   497 --------SKDVLLVTAVADFILKHYSKTGCMLCPDTIANVGGRMFASPRLVFLSKYFEFYEFYR 553
                    |||.|....|...|..|                  .:.:.|.|.||..|..|.:...
 Worm   453 VSRIVGSSSKDELAALRVLSSITNH------------------SVLSLPSLTFLYSYQRFVKMMH 499

  Fly   554 TRDFLSASELLVNLLESKITPD----YFWPSLLIDSMPLLESKDPKI---FAKETVAILHHIETD 611
            ..|.|...:.|:.|:   :.||    |::.  |.|.:..:..:|.:.   |:||   ||:.:.|.
 Worm   500 CGDVLDCVQHLIPLI---MMPDVPTQYYYD--LFDYLITIIKEDGRAGIRFSKE---ILYELSTF 556

  Fly   612 LVPIIERDVSKYGKHHTETVFKDYRVENVDEIMNLLRLACARNLARAL 659
            |      ......||..   ..|..::.|..:..::.|....::|:.:
 Worm   557 L------STFTLDKHRD---LNDNYMKKVKVLKKMVMLKLTDSIAKGI 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup75NP_611300.2 Nucleopor_Nup85 59..610 CDD:311504 125/582 (21%)
npp-2NP_492256.1 Nucleopor_Nup85 35..559 CDD:284900 127/592 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157487
Domainoid 1 1.000 82 1.000 Domainoid score I5419
eggNOG 1 0.900 - - E1_KOG2271
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11755
Inparanoid 1 1.050 83 1.000 Inparanoid score I3763
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG58410
OrthoDB 1 1.010 - - D443305at33208
OrthoFinder 1 1.000 - - FOG0003500
OrthoInspector 1 1.000 - - oto20385
orthoMCL 1 0.900 - - OOG6_104020
Panther 1 1.100 - - LDO PTHR13373
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3890
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.840

Return to query results.
Submit another query.