Protein Alignment pAbp and MIP6

DIOPT Version :10

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_011879.1
• Gene: MIP6 / 856408
• SGDID: S000001057
• Length: 659
• Species: Saccharomyces cerevisiae
• Alignment Length: 485
• Identity: 118/485 - (24%)
• Similarity: 196/485 - (40%)
• Gaps: 103/485 - (21%)

  Fly     3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDL 67
            ||::|:|...|.|..|...|.......|.:||||.:|::||||.|:||:...|||.|....|:.:
Yeast   112 SLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFNYTV 176

  Fly    68 VRNKPIRIMWSQRDPSLRRSGVGNVFIKNL---DRAIDNKAIYDTFSAFGNILSCKVATDEKGNS 129
            ...:.::||.|.::...|::...|||..||   :..:..::.|.....:||:|||.:.     ..
Yeast   177 FFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSCLLE-----RR 236

  Fly   130 KGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG-----------KFIPRKER-------EKELG 176
            |..|||:|:.:.:|...|.|.|.....|.|:..|           :|..||:.       |.||.
Yeast   237 KNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKEVRTRPEFTKRKKMIGSDIVIEDELL 301

  Fly   177 EKAKLFTN-----VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAA 236
            ....|..|     :.|||...|...|::.::|...|.|.|. .:|::...:....||.::..|.:
Yeast   302 ASNNLSDNARSKTILVKNLPSDTTQEEVLDYFSTIGPIKSV-FISEKQANTPHKAFVTYKNEEES 365

  Fly   237 EAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVN----LYVKNLDDT 297
            :.|.:.|| |.:.:..:::|...:.|....|                 .|.|    :|:|||...
Yeast   366 KKAQKCLN-KTIFKNHTIWVGPGKDKPVHNQ-----------------IGTNKKTKVYLKNLSFN 412

  Fly   298 IDDDRL-------RIAFSPYGNITSAKVMTDEEGRSKGF-GFV-CFNAASEATCAVTELNGRVVG 353
            .:.:.:       :|.||      ..|: |:....:..| |.| || :.|:|......|:.|::|
Yeast   413 CNKEFISQLCLQEKIRFS------EIKI-TNYNSLNWTFCGHVECF-SRSDAERLFNILDRRLIG 469

  Fly   354 SKPLYVALAQRKEE----------------RKAHLASQYMR--------HMTGMRMQQLGQIYQP 394
            |..:..:.::..:.                :|....|..||        |..|: ..|..|:..|
Yeast   470 SSLVEASWSKNNDNILNEIDYDDGNNNENYKKLINISSMMRFRTQELSAHQKGL-TSQFQQVVSP 533

  Fly   395 NAASGFFVPTLPSNQRFFGSQVATQMRNTP 424
                   ..:..::.....|.|||.|:..|
Yeast   534 -------FSSYSNSYTNMNSLVATPMKPHP 556

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	118/485 (24%)
MIP6	NP_011879.1	RRM1_PES4_MIP6	111..190	CDD:410180	29/77 (38%)
		RRM2_PES4_MIP6	200..275	CDD:410181	23/79 (29%)
		RRM3_PES4_MIP6	313..385	CDD:410182	17/73 (23%)
		RRM4_PES4_MIP6	400..478	CDD:410183	20/85 (24%)