DRSC/TRiP Functional Genomics Resources

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Protein Alignment pAbp and PAB6

DIOPT Version :9

Sequence 1:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_188259.1 Gene:PAB6 / 820885 AraportID:AT3G16380 Length:537 Species:Arabidopsis thaliana


Alignment Length:454 Identity:189/454 - (41%)
Similarity:264/454 - (58%) Gaps:39/454 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDL 67
            |||||||..||.|..|.||||...||:|:.:||:.:|.:|:.|||:||..|..|..|:..:|...
plant    22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSD 86

  Fly    68 VRNKPIRIMWSQRDPSLR---RSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS 129
            ::.|.:||||||||.:.|   |:|..|:::||||.:|.:..:...|..||:|||||| .:|.|.|
plant    87 LKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKV-VEENGQS 150

  Fly   130 KGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDF 194
            ||:|||.|:||::|.::...::|.::.|||::|.|||.:.||....|.:..  |||||||..|..
plant   151 KGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDS--TNVYVKNLIETV 213

  Fly   195 DDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA 259
            .|:.|...|..||.::|..||....|:|:|||||.|...|.|:.|:::|.|..:| .|.|:|.:|
plant   214 TDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLG-SKKLFVGKA 277

  Fly   260 QKKAERQQELKRKFEE---LKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD 321
            .||.||::.||:||.:   .|.....|    |||||||.:::::.|||..|..||.|.|||||..
plant   278 LKKDERREMLKQKFSDNFIAKPNMRWS----NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH 338

  Fly   322 EEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQ 386
            |.|||||||||||:...|:..|...|||.:|..||:.|.:|:|||:|...| .||.:.......|
plant   339 ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRL-QQYFQAQPRQYTQ 402

  Fly   387 QLGQIYQPNAAS-------------GFFVP-TLPSNQRFFGSQVATQM---RNTPRWVPQVRPP 433
                  .|:|.|             |.|.| .:.::..:.|:|| .||   :|...:||..:.|
plant   403 ------APSAPSPAQPVLSYVSSSYGCFQPFQVGTSYYYMGNQV-PQMSGHQNITTYVPAGKVP 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 189/454 (42%)
PAB6NP_188259.1 PABP-1234 22..477 CDD:130689 189/454 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0123
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53624
OrthoDB 1 1.010 - - D1027234at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.790

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