Protein Alignment pAbp and raver2

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: XP_001338083.4
• Gene: raver2 / 797613
• ZFINID: ZDB-GENE-090713-1
• Length: 862
• Species: Danio rerio
• Alignment Length: 653
• Identity: 134/653 - (20%)
• Similarity: 222/653 - (33%)
• Gaps: 181/653 - (27%)

  Fly     4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLV 68
            :.:.:||||.....:.:....    ..::.|   ...|:.|.|:|.......|:.|:.|::...|
Zfish    96 ILIKNLPQDTTNQEVHEILRE----YELKYC---FVDRNKGTAFVTLLNGDQAQDAIRTLHQTSV 153

  Fly    69 RNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSC-KVATDEKGNSKGY 132
            |.:.|.:.....|..|        .:.||...:......:...::|||..| .|.:|..|:||||
Zfish   154 RGRDINVQLQPTDSLL--------CVTNLPYTVTATQFQELVRSYGNIERCFLVYSDLTGHSKGY 210

  Fly   133 GFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTE----- 192
            |||.:..:::|:.:..::.|                    |.:|::..:.....|...|.
Zfish   211 GFVEYMKKDSASRARSELLG--------------------KPMGDRVLMVQWADVNQLTSADHLH 255

  Fly   193 -----------DFDD-EKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAV----- 240
                       ||:| |:|...|....|....::...|....:||..|.:||.|.|||.:
Zfish   256 SKCLCVDRLPLDFEDSEELAHIFSESYKPVFCQLAQDEGSPVRGFAVVEYETAEQAEAVLLEMDR 320

  Fly   241 QALNGKDM--------GEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDT 297
            |.:.|:::        ..|:|...|....:.......|....|           .|| .:.|:..
Zfish   321 QLIQGQEIRLSLCPPGTSGRSTLAALIAAQGVMLSNKKGLLPE-----------PNL-AQFLNSM 373

  Fly   298 IDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
            .:...|::...||   .:|| ...:.||.....|:                     ..||..||.
Zfish   374 TNPAALQVLMRPY---PTAK-RGGKFGRPHNLPFL---------------------RPPLTAALL 413

  Fly   363 Q-RKEERKAHLAS----QYMRHMTGMRMQQLGQIYQPNAASGFFVPTL---PSN---QRFFGSQV 416
            | .|.::.|.|.:    |.:.||. |..|||.||.....::   ||.|   ||.   |:..|
Zfish   414 QLGKAQQSAILGNGLVLQNLLHMQ-MAQQQLLQIKDKQISN---VPGLLGDPSRLLLQKVLG--- 471

  Fly   417 ATQMRNTPRWVPQVR-----PPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAG------ARGA 470
               :|| |..||..:     .|..:....:...:.|...|....:|.:..:...|      |...
Zfish   472 ---LRN-PATVPLGKGLLGDSPTELGQDSSLVTSHGVNSGMVSHLPGRSLAEQNGVALTCLAPEK 532

  Fly   471 QPQVQGTHAAAAAANNMRNTGARAITGQQTAAPNMQIPG------AQIAGGAQQRTSNYKYTSNM 529
            ||...||...:.::              ||...|. :||      ..:.|.|..:|
Zfish   533 QPAPPGTTGGSLSS--------------QTQLQNF-LPGINTSSLGSLLGSAAHKT--------- 573

  Fly   530 RNPPVPQLHQTQPIPQQLQGKNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGM 594
                 |..|.:..:.......:......|||.: .|:|.|         :..:.:.|||..:.|:
Zfish   574 -----PANHHSASVQTSTSVTSQSGCQTSLLGD-PPKEVK---------LPSNPYLNLASVLPGV 623

  Fly   595 LLE 597
            :|:
Zfish   624 VLQ 626

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	134/653 (21%)
raver2	XP_001338083.4	RRM1_RAVER2	95..164	CDD:241108	15/74 (20%)
		RRM2_RAVER2	168..244	CDD:241110	21/103 (20%)
		RRM_SF	255..352	CDD:327398	22/96 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0123
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.810