Protein Alignment pAbp and ncl

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001070120.2
• Gene: ncl / 767714
• ZFINID: ZDB-GENE-030131-6986
• Length: 705
• Species: Danio rerio
• Alignment Length: 368
• Identity: 96/368 - (26%)
• Similarity: 172/368 - (46%)
• Gaps: 49/368 - (13%)

  Fly     3 SLYVGDL--PQDVNE--SGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
            ||::|:|  .:|.:|  |.:...||..|  |.|   :||....:..:.||:|....:.::||: :
Zfish   288 SLFLGNLNNNKDFDELKSAISKFFSKEG--LEI---QDVRLGGTKKFGYVDFASEEELQKALE-L 346

  Fly    64 NFDLVRNKPIRI----MWSQRDPSLRRSGVGNVFIKNLDRAI---DNKAIYDTFSAFGNILSCKV 121
            |...:..:|:::    .......:.:......:|:|||..:|   |.:.|:|      ..:..:|
Zfish   347 NGKKLLGQPVKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFD------QAVDIRV 405

  Fly   122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG--EKAKLFTN 184
            .....|.|:|..::.|:||..|..::::..|..:.|:.:.| .|...|.|:...|  ..:|:
Zfish   406 PMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIV-DFTGDKSRQGGRGAPSASKV--- 466

  Fly   185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG 249
            :.|.|......::.|:..||   |..|.:: .:.:|:.||:.||.||..|.::.|::..|..|:
Zfish   467 LVVNNLAFSASEDSLQSVFE---KAVSIRI-PQNNGRPKGYAFVEFENVEDSKEALENCNNTDI- 526

  Fly   250 EGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNIT 314
            ||:|:.:..:|...||....:......|          .|:||.|.|...|..|:.:|.  |.|
Zfish   527 EGRSIRLEYSQNDRERGGGGRGNSGPTK----------TLFVKGLSDDTTDQTLKDSFD--GAI- 578

  Fly   315 SAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL-NGRVVGSK 355
            :|::.||.: |.|||||||.|:...:...|...: :|.:.|:|
Zfish   579 AARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDGNK 621

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	96/368 (26%)
ncl	NP_001070120.2	RRM1_NCL	287..361	CDD:240849	21/78 (27%)
		RRM	347..630	CDD:223796	77/303 (25%)
		RRM2_NCL	374..450	CDD:240850	20/82 (24%)
		RRM3_NCL	464..535	CDD:240851	22/78 (28%)
		RRM4_NCL	554..631	CDD:240852	27/81 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910