DRSC/TRiP Functional Genomics Resources

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Protein Alignment pAbp and AT5G08695

DIOPT Version :10

Sequence 1:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001119193.1 Gene:AT5G08695 / 6241377 AraportID:AT5G08695 Length:690 Species:Arabidopsis thaliana


Alignment Length:473 Identity:105/473 - (22%)
Similarity:180/473 - (38%) Gaps:122/473 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMN---- 64
            |:|..||....|..|.:.||..|.:..:.:..|..||...|.|:|.:..|..|:.|:|.::    
plant   229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKLDKLPF 293

  Fly    65 ----FDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLD------RAIDNKAIYDTF-----SAFG 114
                ..::..||..:...|.|.|   |.:...|.|..:      .|..|...:::|     :...
plant   294 QGRTLHILPAKPRAMSAKQVDNS---SNLPKSFKKEREEQRKASEACGNTNAWNSFFMRPDTILE 355

  Fly   115 NILSCKVATDEK---------------GNSKGYGFVHFETEEAAN------TSIDKV---NGMLL 155
            |::.....|..:               |.::    |..||:||..      ||:::.   .|.:.
plant   356 NLVRSYGVTKSELLDRECEDPAVRLALGETR----VIMETKEALAKAGVRVTSLEEFAARKGDVK 416

  Fly   156 N-GKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED 219
            | .|.:.:.|.:|....||||.                        :.|..:|.:.  |::..  
plant   417 NRSKHILLVKHLPFASTEKELA------------------------QMFRKFGSLD--KIVLP-- 453

  Fly   220 GKSKGFGFVAFETTEAAEAAVQALNG-----------------KDMGEGKSLYVARAQKKAERQQ 267
             .:|....|.|  .|||||.. |:||                 :|:.|.|:|...:.:|.|..:.
plant   454 -PTKTMALVVF--LEAAEARA-AMNGLAYTRYKDAPLYLEWAPRDILEPKALADNKEKKSAVEEN 514

  Fly   268 ELKRKFEELKQKRHESVFGVN-LYVKNLDDTIDDDRLR---IAFSPYGNITSAK-VMTD-EEGRS 326
            :.:|...:.:...:..:...| |:||||.....|:.|:   ......|.|.|.| ::.| ...||
plant   515 DARRVNLDQQVGIYSDITESNVLHVKNLSFKTTDEGLKKHLTGVVKQGKILSVKQIIRDWTRRRS 579

  Fly   327 KGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRK--------EERKAHLASQYMRHM--- 380
            .|:|||.|::...||....:|.|.|:....|.:..::.|        .::...||..:::::   
plant   580 SGYGFVEFDSVETATSVYRDLPGNVLDGHSLILNFSENKRSETVGEGSDKVTKLAKLHVKNVAFE 644

  Fly   381 -TGMRMQQL----GQIYQ 393
             |...::||    |||.:
plant   645 ATKKELRQLFSPFGQIQE 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 105/473 (22%)
AT5G08695NP_001119193.1 PABP-1234 3..>336 CDD:130689 27/109 (25%)
RRM1_MRD1 4..79 CDD:409981
RRM_SF 225..303 CDD:473069 19/73 (26%)
RRM4_RBM19_RRM3_MRD1 421..492 CDD:409756 20/102 (20%)
RRM_SF 535..615 CDD:473069 26/79 (33%)
RRM_SF 635..>661 CDD:473069 5/25 (20%)
Blue background indicates that the domain is not in the aligned region.

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