DRSC/TRiP Functional Genomics Resources

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Protein Alignment pAbp and pabpc1l

DIOPT Version :9

Sequence 1:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001005062.1 Gene:pabpc1l / 448615 XenbaseID:XB-GENE-5742459 Length:629 Species:Xenopus tropicalis


Alignment Length:646 Identity:355/646 - (54%)
Similarity:436/646 - (67%) Gaps:52/646 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNF 65
            :||||||||..||.|:.|::|||.|||::|||||||:.|||||||||:|||||||||||||||||
 Frog    10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNF 74

  Fly    66 DLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSK 130
            ::::.:|||||||||||.||:||||||||||||.:|||||:|||||||||||||||..||.| |:
 Frog    75 EVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SR 138

  Fly   131 GYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFD 195
            |||||||||:||||.:|..:||||||.:||:||.|..|:|||.|.|.|...|||||:|||.||.|
 Frog   139 GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMD 203

  Fly   196 DEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
            |::|:|.|..:|...|.|||..:.|:|:|||||.:...|.|:.||..:|||:: .|:.:||.|||
 Frog   204 DKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEV-NGRMIYVGRAQ 267

  Fly   261 KKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
            |:.|||.|||||||::||:|.....|||||||||||.|||||||..|||||.|||||||| |.|.
 Frog   268 KRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT-EGGH 331

  Fly   326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQ--- 387
            |||||||||::..|||.||||:|||:|.:||||||||||||||||.|.:|||:.:..||...   
 Frog   332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPL 396

  Fly   388 LGQIYQPNAASGFFVPTLPS--NQRFFGSQVATQMRNTPRWV------PQVRPPAAIQGVQAGAA 444
            ||...||   :.:|:|.:|.  |:.|:.......:|..|:|.      ||.:|||.:.       
 Frog   397 LGSFQQP---ANYFLPAMPQPPNRTFYSPNPVAPVRQAPQWTSHQSRPPQYQPPAPLM------- 451

  Fly   445 AAGGFQGTAGAVPTQFRSAAAGARGAQPQVQ--GTHAAAAAANNMRNTGARAITGQQTAAPNMQI 507
                    ....|.:..|..:..:.|..||.  ..|:...|....:..|||              
 Frog   452 --------RAVPPRRMSSNISTMKQASTQVPRVAPHSQRVANIGTQTAGAR-------------- 494

  Fly   508 PGAQIAGGAQQRTSNYKYTSNMRN--PPVPQLHQTQPIPQQLQGKNSEKLIASLLANAKPQEQKQ 570
              ||:.....:...:|||:..:||  |.....|..|.:...:..:..|.|.||.||:|.||||||
 Frog   495 --AQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQGQEPLTASSLASAPPQEQKQ 557

  Fly   571 ILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVHRVTE 631
            :|||||||:|..||..||||||||||||:|||||||:|..|:|.:||||||||||.|:..|
 Frog   558 MLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKE 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 351/637 (55%)
pabpc1lNP_001005062.1 PABP-1234 11..612 CDD:130689 351/637 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 122 1.000 Domainoid score I5572
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 689 1.000 Inparanoid score I681
OMA 1 1.010 - - QHG53624
OrthoDB 1 1.010 - - D1027234at2759
OrthoFinder 1 1.000 - - FOG0000294
OrthoInspector 1 1.000 - - otm49359
Panther 1 1.100 - - LDO PTHR24012
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X269
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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