Protein Alignment pAbp and cocoon

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001261874.1
• Gene: cocoon / 39665
• FlyBaseID: FBgn0036496
• Length: 318
• Species: Drosophila melanogaster
• Alignment Length: 219
• Identity: 48/219 - (21%)
• Similarity: 90/219 - (41%)
• Gaps: 52/219 - (23%)

  Fly   110 FSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGK----KVYVGKFIPRK 169
            |..:|:::..::..|.: |:|||:|||.|.:.:.....:.|.:.  ::|:    ||...:.:..:
  Fly   127 FETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKRHS--IDGRWCEVKVPASRGMGNQ 189

  Fly   170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTE 234
            |..|           |:|...|||.:.:.|:|:|..:|::....:..    ..:.|.||.|....
  Fly   190 EPGK-----------VFVGRCTEDIEADDLREYFSKFGEVIDVFIPK----PFRAFSFVTFLDPY 239

  Fly   235 AAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTI- 298
            ....   ....|.:.:|.|::|:.|.||              ..:....:|..|.| .|||:..
  Fly   240 VPRV---VCGEKHIIKGVSVHVSTADKK--------------NVQNKNQLFQTNNY-NNLDNNFK 286

  Fly   299 ----DDDRLRIA-------FSPYG 311
                ::.|:..|       |:|:|
  Fly   287 MQPANNFRMHPANNFSMHSFNPHG 310

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	48/219 (22%)
cocoon	NP_001261874.1	RRM1_TDP43	108..184	CDD:240767	15/58 (26%)
		RRM2_TDP43	193..262	CDD:240768	18/86 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439606
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930