Protein Alignment pAbp and lark

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Alignment Length: 381
• Identity: 79/381 - (20%)
• Similarity: 135/381 - (35%)
• Gaps: 91/381 - (23%)

  Fly   185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG 249
            :::.|..|.....:|:..||.||.:....|:       |.:|||..||.:....|:|.|||..:
  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDVV-------KNYGFVHMETEQQGRDAIQNLNGYTL- 65

  Fly   250 EGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNIT 314
                             .|...|.|..|.:|..:.....::|.||.|......:|..|..||.:.
  Fly    66 -----------------NEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVV 113

  Fly   315 SAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQ---Y 376
            ...::       :.:|||..:...:...|:.|||||||..:||.|.::..:...|..:...   |
  Fly   114 ECDIV-------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCY 171

  Fly   377 MRHMTGMRMQQLGQIY----------QPNAASGF---------FVPTLPS--------------- 407
            ....:|...::..::|          .|.:|.|:         :.|..|.
  Fly   172 RCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDY 236

  Fly   408 ---NQRFFGSQ-------VATQMRNTP-----RWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVP 457
               ::||..|:       ..::||:.|     |..|...||.....:::.:.:.|.....:...|
  Fly   237 DYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSP 301

  Fly   458 TQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQQTAAPNMQIPGAQIA 513
            ...||:...:|...|...|....:..|.:.|...:|.:.|...       ||.:.|
  Fly   302 PPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSP-------PGRRYA 350

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	79/381 (21%)
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	21/88 (24%)
		RRM1_2_CoAA_like	87..152	CDD:409779	21/71 (30%)
		hnRNP-R-Q	<88..>258	CDD:273732	34/176 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439618
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840