Protein Alignment pAbp and shep

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 543
• Identity: 120/543 - (22%)
• Similarity: 184/543 - (33%)
• Gaps: 137/543 - (25%)

  Fly    46 AYVNFQQPADAERALDTMNFDLVRNKPIRIMW-SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDT 109
            ||..:........|..|::|   .::|:...| .||.|                          |
  Fly   152 AYAAYTPHTATTPATTTVSF---LSQPVDYYWYGQRVP--------------------------T 187

  Fly   110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKE 174
            .::..|..|.  ::...|:..|............||::.. ||.:.|              :.::
  Fly   188 AASPSNTNSS--SSSNTGSQSGTLSTSLSNTTNTNTNMGP-NGTVQN--------------QNQQ 235

  Fly   175 LGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYK-VMSKEDGKSKGFGFVAFETTEAAEA 238
            .||:... ||:|::...:...|:.|......||.|.|.| ::.|...|.||:|||.||....||.
  Fly   236 GGEQLSK-TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAEC 299

  Fly   239 AVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
            ||:.|.||.:         :||...:::|:                 ..|||:.||.....:..|
  Fly   300 AVKGLQGKGV---------QAQMAKQQEQD-----------------PTNLYIANLPPHFKETDL 338

  Fly   304 RIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVV-GSK-PLYVALAQRKE 366
            ....|.||.:.|.:::.|::..|||.||....:..:....:...||..: |:| ||.|..|.
  Fly   339 EAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFAD--- 400

  Fly   367 ERKAHLASQYMRHMTGMRMQQLGQIYQPNA-------ASGF---FVPTLPSNQRFFGSQVATQMR 421
                          .|.:.:.|.:...|||       |.|.   :.||:..|    |..|..
  Fly   401 --------------GGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQN----GVSVNV--- 444

  Fly   422 NTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGA-----RGAQPQVQGTHAAA 481
            .||..||..|    ....|.|.....|.|...|.:.||.....:.:     ..|.|.:..|....
  Fly   445 GTPIGVPYSR----FSAPQVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKP 505

  Fly   482 AAANNMRNTGARAITGQQTAAP--NMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIP 544
            .|.|.::..|...:....|..|  .|....|.:..|....:..|.|.:     |.|.:..|.|:.
  Fly   506 EAVNQVQPRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYA-----PPPTIIPTMPMT 565

  Fly   545 QQLQGKNSEKLIASLLANAKPQE 567
            ...|...:          |.|.|
  Fly   566 DSEQASTA----------ASPDE 578

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	120/543 (22%)
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	27/78 (35%)
		RRM2_MSSP	322..400	CDD:240690	23/77 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439589
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24012
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.940