Protein Alignment pAbp and hfp

DIOPT Version :9

• Sequence 1: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_525123.2
• Gene: hfp / 38173
• FlyBaseID: FBgn0028577
• Length: 637
• Species: Drosophila melanogaster
• Alignment Length: 647
• Identity: 139/647 - (21%)
• Similarity: 237/647 - (36%)
• Gaps: 149/647 - (23%)

  Fly     1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNF 65
            :..|..|.||:..:|.  .|..|.|......:..:.|:.:::|          |..::.|.|...
  Fly    66 LLGLLGGALPKLSSEQ--HDLVSKAKKYAMEQSIKMVLMKQTL----------AHQQQQLATQRT 118

  Fly    66 DLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNS 129
            .:.|.:.:.:|.             .|::.::...:....|...|:.||.|.|..::.|. ....
  Fly   119 QVQRQQALALMC-------------RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKH 170

  Fly   130 KGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGK--FIPRKERE-KELGEKAKLFTNVYVKNFT 191
            ||:.||.:|..|.|..:::::||.|:.|:.:.||:  .:|:.::. .|:.|:||.|..:||.:..
  Fly   171 KGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIH 235

  Fly   192 EDFDDEKLKEFFEPYGKITSYKVMSKEDGKS----KGFGFVAFETTEAAEAAVQALNGKDMGEGK 252
            .|..:|.:|..||.:|.|...|:   ..|.|    ||:||:.:...:|.:.|:.::|..|:| |:
  Fly   236 PDLSEEDIKSVFEAFGPILYCKL---AQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLG-GQ 296

  Fly   253 SLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAK 317
            .|.|.|                        |:...|.    |.....:..:..|.:......:||
  Fly   297 LLRVGR------------------------SITPPNA----LACPTTNSTMPTAAAVAAAAATAK 333

  Fly   318 VMT-DEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKP----------LYVALAQRKEERKAH 371
            :.. |....:...|.........|...||:     ||:.|          |:.||||   ...|.
  Fly   334 IQALDAVASNAVLGLSQNTPVMAAGAVVTK-----VGAMPVVSAATSAAALHPALAQ---AAPAL 390

  Fly   372 LASQYMRHMTGMRMQQLG--QIYQPNAASGFFVPTLPSNQRFFGSQVATQMRNTPRWVPQVRPPA 434
            |.....:..|.:....||  ...||..|   .|||||                .|..:.....|.
  Fly   391 LPPGIFQAPTPVAPSLLGVPAGLQPLQA---VVPTLP----------------PPALLATPTLPM 436

  Fly   435 AIQGVQAG----AAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAI 495
            .:.||..|    .|...|.:.:.||......||||           .:||..|||...|. .:|.
  Fly   437 TVGGVGVGLVPTVATLAGAEASKGAAAAAALSAAA-----------NNAAVTAANLSENI-KKAH 489

  Fly   496 TGQQTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQLQGKNSEKLIASLL 560
            ..||.......:....:....||...:.|..|           ..|.:.|:|......::|  :|
  Fly   490 EKQQEELQKKLMDEGDVQTLQQQENMSIKGQS-----------ARQLVMQRLMRPVDSRVI--IL 541

  Fly   561 AN-AKPQEQKQILGERLYPMIEHMHANLAGKITGMLL----EIENSELLHMIEDQEALKAKV 617
            .| ..|::..:.|.|.:     ....:..|.::.:::    :.||.:     :|:..:..|:
  Fly   542 RNMVGPEDVDETLQEEI-----QEECSKFGTVSRVIIFNEKQTENED-----DDEAEIIVKI 593

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	139/646 (22%)
hfp	NP_525123.2	half-pint	10..637	CDD:130706	139/647 (21%)
		RRM1_PUF60	130..205	CDD:240816	20/87 (23%)
		RRM2_PUF60	227..303	CDD:240817	25/103 (24%)
		RRM3_UHM_PUF60	536..636	CDD:241092	11/70 (16%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439564
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840